[][src]Crate consprob

Re-exports

pub use utils::*;

Modules

utils

Structs

BufWriter

Wraps a writer and buffers its output.

FastaRecord
File

A reference to an open file on the filesystem.

Options

A description of the options that a program can handle.

Path

A slice of a path (akin to str).

PctStaProbMats
Pool

A threadpool that acts as a handle to a number of threads spawned at construction.

Reader

A FASTA reader.

StaFeParams
StaPartFuncMats
StaPartFuncMats4Posterior
StaProbMats
TmpPartFuncSets
TmpPartFuncs

Constants

ACCESS_BPP_MAT_ON_2L_FILE_NAME
ACCESS_BPP_MAT_ON_ML_FILE_NAME
BPP_MAT_FILE_NAME
BPP_MAT_ON_EL_FILE_NAME
BPP_MAT_ON_SS_FILE_NAME
DEFAULT_MIN_BPP
DEFAULT_OFFSET_4_MAX_GAP_NUM
MAX_BPP_MAT_FILE_NAME
MAX_GAP_NUM_4_IL
MAX_UPP_MAT_FILE_NAME
MIN_GAP_NUM_4_IL
UPP_MAT_FILE_NAME
UPP_MAT_ON_2L_FILE_NAME
UPP_MAT_ON_EL_FILE_NAME
UPP_MAT_ON_HL_FILE_NAME
UPP_MAT_ON_ML_FILE_NAME

Traits

BufRead

A BufRead is a type of Reader which has an internal buffer, allowing it to perform extra ways of reading.

Read

The Read trait allows for reading bytes from a source.

Seek

The Seek trait provides a cursor which can be moved within a stream of bytes.

Write

A trait for objects which are byte-oriented sinks.

Functions

consprob
create_dir

Creates a new, empty directory at the provided path

from_utf8_unchecked

Converts a slice of bytes to a string slice without checking that the string contains valid UTF-8.

get_max_bp_span
get_seq_len_diff
get_sta_inside_part_func_mats
get_sta_inside_part_func_mats_4_posterior
get_sta_prob_mats
get_sta_prob_mats_4_posterior
get_tmp_part_func_set_mat
get_tmp_part_func_set_mat_4_posterior
io_algo_4_prob_mats
multizip

An iterator that generalizes .zip() and allows running multiple iterators in lockstep.

pct_of_prob_mats
print_program_usage
remove_small_bpps_from_bpp_mat
sumormax
write_prob_mat_sets

Type Definitions

Arg
Args
BoolsWithPosPairs
FastaId
FastaRecords
FreeEnergyPair
FreeEnergySetPair
NumOfThreads
PartFunc4dMat
PosPairsWithPosPairs
Poss
Prob1dMats
Prob4dMat
Prob4dMatsWithRnaIdPairs
ProbMatPair
ProbMatSets
ProbMats
ProbSeqPair
ProbSetPair
RnaId
RnaIdPair
SeqPair
SparseFreeEnergyMat
SparseProbMatPair
SsFreeEnergyMatSetPair
StaFeParamSetsWithRnaIdPairs
StaProbMatsWithRnaIdPairs
TmpPartFuncSetMat
TmpPartFuncSetMat4Posterior
TmpPartFuncSetMat4El
TmpPartFuncSetMatsWithPosPairs
TmpPartFuncSetMatsWithPosPairs4Posterior
TmpPartFuncSetMatsWithPosQuadruples
TmpPartFuncSetMatsWithPosQuadruples4Posterior