Trainable RNA Structural Aligner

Installation

This project is written mainly in Rust, a systems programming language. You need to install Rust components, i.e., rustc (the Rust compiler), cargo (the Rust package manager), and the Rust standard library. Visit the Rust website to see more about Rust. You can install Rust components with the following one line:

$ curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh

The above installation is done by Rustup, and Rustup enables to easily switch a compiler in use. You can install ConsAlign as follows:

$ # AVX, SSE, and MMX enabled for rustc (another example: RUSTFLAGS='--emit asm -C target-feature=+avx2 -C target-feature=+ssse3 -C target-feature=+mmx -C target-feature=+fma')
$ RUSTFLAGS='--emit asm -C target-feature=+avx -C target-feature=+ssse3 -C target-feature=+mmx' cargo install consalign

Check if you have installed ConsAlign properly as follows:

$ consalign # Its available command options will be displayed.

Author

Heartsh

License

Copyright (c) 2018 Heartsh
Licensed under the MIT license.