Struct codenano::Parameters

pub struct Parameters {
    pub z_step: f64,
    pub helix_radius: f64,
    pub bases_per_turn: f64,
    pub groove_angle: f64,
    pub inter_helix_gap: f64,
}

DNA geometric parameters.

Fields

z_step: f64

Distance between two consecutive bases along the axis of a helix, in nanometers.

helix_radius: f64

Radius of a helix, in nanometers.

bases_per_turn: f64

Number of bases per turn in nanometers.

groove_angle: f64

Minor groove angle. DNA helices have a "minor groove" and a "major groove", meaning that two paired nucleotides are not at opposite positions around a double helix (i.e. at an angle of 180°), but instead have a different angle.

Strands are directed. The "normal" direction is called "5' to 3'" (named after parts of the nucleotides). This parameter is the small angle, which is clockwise from the normal strand to the reverse strand.

inter_helix_gap: f64

Gap between two neighbouring helices.

Implementations

impl Parameters

pub const DEFAULT: Parameters

Default values for the parameters of DNA, taken from the litterature.

Trait Implementations

impl Clone for Parameters

fn clone(&self) -> Parameters

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Copy for Parameters

impl Debug for Parameters

fn fmt(&self, f: &mut Formatter) -> Result

Formats the value using the given formatter.

impl<'de> Deserialize<'de> for Parameters

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error> where
    __D: Deserializer<'de>, 

Deserialize this value from the given Serde deserializer.

impl Serialize for Parameters

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error> where
    __S: Serializer, 

Serialize this value into the given Serde serializer.