use crate::{Monotonicity, Regulation, RegulatoryGraph, VariableId, ID_REGEX_STR};
use regex::Regex;
const REGULATION_ARROW_REGEX_STR: &str = r"-(?P<monotonicity>[|>?])(?P<observable>\??)";
lazy_static! {
static ref REGULATION_REGEX: Regex = Regex::new(
format!(
r"^(?P<regulator>{})\s*{}\s*(?P<target>{})$",
ID_REGEX_STR,
REGULATION_ARROW_REGEX_STR,
ID_REGEX_STR,
).as_str()
).unwrap();
}
impl Regulation {
pub fn is_observable(&self) -> bool {
self.observable
}
pub fn get_monotonicity(&self) -> Option<Monotonicity> {
self.monotonicity
}
pub fn get_regulator(&self) -> VariableId {
self.regulator
}
pub fn get_target(&self) -> VariableId {
self.target
}
}
impl Regulation {
pub fn try_from_string(
regulation: &str,
) -> Option<(String, Option<Monotonicity>, bool, String)> {
REGULATION_REGEX
.captures(regulation.trim())
.map(|captures| {
let monotonicity = match &captures["monotonicity"] {
"?" => None,
"|" => Some(Monotonicity::Inhibition),
">" => Some(Monotonicity::Activation),
_ => unreachable!("Nothing else matches this group."),
};
let observable = captures["observable"].is_empty();
(
captures["regulator"].to_string(),
monotonicity,
observable,
captures["target"].to_string(),
)
})
}
pub fn to_string(&self, context: &RegulatoryGraph) -> String {
let monotonicity = match self.get_monotonicity() {
None => "?",
Some(Monotonicity::Activation) => ">",
Some(Monotonicity::Inhibition) => "|",
};
let observability = if self.is_observable() { "" } else { "?" };
format!(
"{} -{}{} {}",
context.get_variable_name(self.regulator),
monotonicity,
observability,
context.get_variable_name(self.target)
)
}
}
#[cfg(test)]
mod tests {
use crate::{BooleanNetwork, Regulation};
use std::convert::TryFrom;
#[test]
fn regulation_conversion() {
let bn = BooleanNetwork::try_from(
r"
a -?? b
b -? c
c ->? d
d -> e
e -|? f
f -| g
",
)
.unwrap();
for regulation in bn.graph.regulations() {
let (r, m, o, t) =
Regulation::try_from_string(®ulation.to_string(bn.as_graph())).unwrap();
assert_eq!(&r, bn.get_variable_name(regulation.get_regulator()));
assert_eq!(&t, bn.get_variable_name(regulation.get_target()));
assert_eq!(m, regulation.get_monotonicity());
assert_eq!(o, regulation.is_observable());
}
assert_eq!(None, Regulation::try_from_string("a --> b"));
}
}