Enum bio::alignment::AlignmentOperation
source ·
[−]Expand description
Alignment operations supported are match, substitution, insertion, deletion and clipping. Clipping is a special boundary condition where you are allowed to clip off the beginning/end of the sequence for a fixed clip penalty. The clip penalty could be different for the two sequences x and y, and the clipping operations on both are distinguishable (Xclip and Yclip). The usize value associated with the clipping operations are the lengths clipped. In case of standard modes like Global, Semi-Global and Local alignment, the clip operations are filtered out
Variants
Match
Subst
Del
Ins
Xclip(usize)
Tuple Fields
0: usize
Yclip(usize)
Tuple Fields
0: usize
Trait Implementations
This method tests for self
and other
values to be equal, and is used
by ==
. Read more
This method tests for !=
.
Auto Trait Implementations
impl RefUnwindSafe for AlignmentOperation
impl Send for AlignmentOperation
impl Sync for AlignmentOperation
impl Unpin for AlignmentOperation
impl UnwindSafe for AlignmentOperation
Blanket Implementations
Mutably borrows from an owned value. Read more
Compare self to key
and return true
if they are equal.
The inverse inclusion map: attempts to construct self
from the equivalent element of its
superset. Read more
pub fn is_in_subset(&self) -> bool
pub fn is_in_subset(&self) -> bool
Checks if self
is actually part of its subset T
(and can be converted to it).
pub fn to_subset_unchecked(&self) -> SS
pub fn to_subset_unchecked(&self) -> SS
Use with care! Same as self.to_subset
but without any property checks. Always succeeds.
pub fn from_subset(element: &SS) -> SP
pub fn from_subset(element: &SS) -> SP
The inclusion map: converts self
to the equivalent element of its superset.