[package]
name = "bio"
version = "0.33.0"
authors = ["Johannes Köster <johannes.koester@tu-dortmund.de>"]
description = "A bioinformatics library for Rust. This library provides implementations of many algorithms and data structures that are useful for bioinformatics, but also in other fields."
homepage = "https://rust-bio.github.io"
repository = "https://github.com/rust-bio/rust-bio"
documentation = "https://docs.rs/bio"
readme = "README.md"
license = "MIT"
build = "build.rs"
edition = "2018"
[package.metadata.release]
pre-release-commit-message = "release version {{version}}"
tag-message = "Version {{version}} of Rust-Bio."
[features]
runtime-dispatch-simd = ["bytecount/runtime-dispatch-simd"]
generic-simd = ["bytecount/generic-simd"]
phylogeny = ["pest", "pest_derive", "bio-types/phylogeny"]
[dependencies]
bytecount = "0.6"
csv = "1.1"
num-traits = "0.2"
num-integer = "0.1"
itertools = ">= 0.8, <= 0.9"
itertools-num = "0.1"
bv = { version = "0.11", features = ["serde"] }
bit-set = "0.5"
ndarray= ">=0.13, <=0.14"
lazy_static = "1.4"
serde = "1.0"
serde_derive = "1.0"
approx = "0.3"
custom_derive = "0.1"
newtype_derive = "0.1"
ordered-float = "1.0"
regex = "1.3"
multimap = ">=0.6, <=0.8"
fxhash = "0.2"
statrs = ">= 0.11, <= 0.13"
bio-types = ">=0.11.0"
pest = { version = "2", optional = true }
pest_derive = { version = "2", optional = true }
fnv = "1.0"
strum = ">= 0.16, <= 0.20"
strum_macros = ">= 0.16, <= 0.20"
getset = "0.0.9"
enum-map = "0.6"
triple_accel = "0.3"
thiserror = "1"
anyhow = "1"
[dependencies.vec_map]
version = "0.8"
features = ["eders"]
[dependencies.petgraph]
version = ">=0.4, <=0.5"
features = ["stable_graph"]
[dev-dependencies]
proptest = "0.10"
tempfile = "3.1.0"