Crate bio_types

source ·

Modules

  • alignment
    Types for representing pairwise sequence alignments
  • annot
    Data types for positions and regions on named sequences (e.g. chromosomes), useful for annotating features in a genome. For example, these data types let you represent that TMA22 is on chromosome X, positions 461,829-462,426, on the forward strand. They also allow coordinate math on these annotations, e.g., that position chrX:461,839 is +10 within TMA22 and vice versa.
  • genome
  • sequence
  • strand
    Data types for strand information on annotations.
  • variant