1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
use genome;
use sequence::{Base, Sequence};
pub trait AbstractVariant: genome::AbstractLocus {
fn kind(&self) -> &Kind;
}
#[derive(Debug, PartialEq, Eq, Clone, Hash, Serialize, Deserialize)]
pub enum Kind {
SNV(Base),
MNV(Sequence),
Insertion(Sequence),
Deletion(genome::Length),
Duplication(genome::Length),
Inversion(genome::Length),
None,
}
impl Kind {
pub fn len(&self) -> genome::Length {
match self {
&Kind::SNV(_) => 1,
&Kind::MNV(ref s) => s.len() as u32,
&Kind::Insertion(ref s) => s.len() as u32,
&Kind::Deletion(l) => l,
&Kind::Duplication(l) => l,
&Kind::Inversion(l) => l,
&Kind::None => 1,
}
}
}