Module bam::bam_reader [−][src]
Indexed and consecutive BAM readers.
Structs
BamReader | BAM file reader. In contrast to IndexedReader the |
IndexedReader | BAM file reader. In contrast to BamReader the |
IndexedReaderBuilder | IndexedReader builder. Allows to specify paths to BAM and BAI files, as well as the number of threads and an option to ignore or warn BAI modification time check. |
Region | Genomic coordinates, used in [struct.IndexedReader.html#method.fetch] and [struct.IndexedReader.html#method.pileup].
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RegionViewer | Iterator over records in a specific region. Implements RecordReader trait. |
Enums
ModificationTime | Defines how to react to a BAI index being younger than BAM file. |