PDBget
CLI program to download files from rcsb.org or PDBe
Installation
Using Cargo
From sources
Usage
<PDBs>...
With the -s option, you can specify the server where download files. Possible server are:
- rcsb : RCSB.org
- pdbe : PDBe Note that all formats are not available for all server. Check the table.
Format | RCSB | PDBe |
---|---|---|
FASTA | :heavy_check_mark: | :heavy_check_mark: |
PDB | :heavy_check_mark: | :heavy_check_mark: |
PDBGZ | :heavy_check_mark: | :heavy_check_mark: |
CIF | :heavy_check_mark: | :heavy_check_mark: |
CIFGZ | :heavy_check_mark: | :x: |
XML | :x: | :heavy_check_mark: |
XMLGZ | :heavy_check_mark: | :x: |
With the -t option, you can specify the output file format. Possible format are:
- pdb : PDB format
- pdbgz : GZ compression of a PDB file
- cif : CIF format
- cifgz : GZ compression of a CIF file
- fasta : FASTA sequence(s) of the protein
- xml : GZ compression of an XML file (uncompress XML are not provide on rcsb.org)