[−] List of all items
Structs
- FlagFilter
- ReadsMapped
- bam_generator::BamFileNamedReader
- bam_generator::BamGeneratorSet
- bam_generator::FilteredBamReader
- bam_generator::NamedBamMaker
- bam_generator::NamedBamMakerGenerator
- bam_generator::StreamingFilteredNamedBamReader
- bam_generator::StreamingFilteredNamedBamReaderGenerator
- bam_generator::StreamingNamedBamReader
- bam_generator::StreamingNamedBamReaderGenerator
- bwa_index_maintenance::TemporaryBwaIndexStruct
- bwa_index_maintenance::VanillaBwaIndexStuct
- coverage_takers::CoverageEntry
- coverage_takers::CoverageTakerTypeIterator
- coverage_takers::EntryAndCoverages
- filter::ReferenceSortedBamFilter
- genomes_and_contigs::GenomesAndContigs
- mapping_parameters::MappingParameters
- mapping_parameters::OneSampleMappingParameters
- mapping_parameters::SingleReferenceMappingParameters
Enums
- coverage_printer::CoveragePrinter
- coverage_takers::CoverageTakerType
- mapping_parameters::ReadFormat
- mosdepth_genome_coverage_estimators::CoverageEstimator
Traits
- bam_generator::NamedBamReader
- bam_generator::NamedBamReaderGenerator
- bwa_index_maintenance::BwaIndexStruct
- coverage_takers::CoverageTaker
- mosdepth_genome_coverage_estimators::MosdepthGenomeCoverageEstimator
Functions
- bam_generator::generate_bam_maker_generator_from_reads
- bam_generator::generate_filtered_bam_readers_from_bam_files
- bam_generator::generate_filtered_named_bam_readers_from_reads
- bam_generator::generate_named_bam_readers_from_bam_files
- bam_generator::generate_named_bam_readers_from_reads
- bwa_index_maintenance::generate_bwa_index
- bwa_index_maintenance::generate_concatenated_fasta_file
- contig::contig_coverage
- coverage_printer::print_dense_cached_coverage_taker
- coverage_printer::print_sparse_cached_coverage_taker
- external_command_checker::check_for_bwa
- external_command_checker::check_for_samtools
- genome::mosdepth_genome_coverage
- genome::mosdepth_genome_coverage_with_contig_names
- read_genome_fasta_files