Trait coverm::mosdepth_genome_coverage_estimators::MosdepthGenomeCoverageEstimator

pub trait MosdepthGenomeCoverageEstimator {
    fn setup(&mut self);
    fn add_contig(
        &mut self, 
        ups_and_downs: &Vec<i32>, 
        num_mapped_reads: u64, 
        total_mismatches: u32
    );
    fn calculate_coverage(&mut self, unobserved_contig_length: u32) -> f32;
    fn print_coverage<T: CoverageTaker>(
        &self, 
        coverage: &f32, 
        coverage_taker: &mut T
    );
    fn print_zero_coverage<T: CoverageTaker>(
        &self, 
        coverage_taker: &mut T, 
        entry_length: u32
    );
    fn copy(&self) -> CoverageEstimator;
    fn num_mapped_reads(&self) -> u64;
}

Required methods

fn setup(&mut self)

fn add_contig(
    &mut self,
    ups_and_downs: &Vec<i32>,
    num_mapped_reads: u64,
    total_mismatches: u32
)

fn calculate_coverage(&mut self, unobserved_contig_length: u32) -> f32

fn print_coverage<T: CoverageTaker>(
    &self,
    coverage: &f32,
    coverage_taker: &mut T
)

fn print_zero_coverage<T: CoverageTaker>(
    &self,
    coverage_taker: &mut T,
    entry_length: u32
)

fn copy(&self) -> CoverageEstimator

fn num_mapped_reads(&self) -> u64

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Implementors

impl MosdepthGenomeCoverageEstimator for CoverageEstimator

fn setup(&mut self)

fn add_contig(
    &mut self,
    ups_and_downs: &Vec<i32>,
    num_mapped_reads_in_contig: u64,
    total_mismatches_in_contig: u32
)

fn calculate_coverage(&mut self, unobserved_contig_length: u32) -> f32

fn copy(&self) -> CoverageEstimator

fn print_coverage<T: CoverageTaker>(
    &self,
    coverage: &f32,
    coverage_taker: &mut T
)

fn print_zero_coverage<T: CoverageTaker>(
    &self,
    coverage_taker: &mut T,
    entry_length: u32
)

fn num_mapped_reads(&self) -> u64

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