Struct consprob_trained::FeatureCountSets

source ·

pub struct FeatureCountSets {Show 31 fields
    pub hairpin_loop_length_counts: HairpinLoopLengthCounts,
    pub bulge_loop_length_counts: BulgeLoopLengthCounts,
    pub interior_loop_length_counts: InteriorLoopLengthCounts,
    pub interior_loop_length_counts_symm: InteriorLoopLengthCountsSymm,
    pub interior_loop_length_counts_asymm: InteriorLoopLengthCountsAsymm,
    pub stack_count_mat: StackCountMat,
    pub terminal_mismatch_count_mat: TerminalMismatchCount4dMat,
    pub left_dangle_count_mat: DangleCount3dMat,
    pub right_dangle_count_mat: DangleCount3dMat,
    pub helix_end_count_mat: HelixEndCountMat,
    pub base_pair_count_mat: BasePairCountMat,
    pub interior_loop_length_count_mat_explicit: InteriorLoopLengthCountMatExplicit,
    pub bulge_loop_0x1_length_counts: BulgeLoop0x1LengthCounts,
    pub interior_loop_1x1_length_count_mat: InteriorLoop1x1LengthCountMat,
    pub multi_loop_base_count: FeatureCount,
    pub multi_loop_basepairing_count: FeatureCount,
    pub multi_loop_accessible_baseunpairing_count: FeatureCount,
    pub external_loop_accessible_basepairing_count: FeatureCount,
    pub external_loop_accessible_baseunpairing_count: FeatureCount,
    pub match_2_match_count: FeatureCount,
    pub match_2_insert_count: FeatureCount,
    pub insert_extend_count: FeatureCount,
    pub init_match_count: FeatureCount,
    pub init_insert_count: FeatureCount,
    pub insert_counts: InsertCounts,
    pub align_count_mat: AlignCountMat,
    pub hairpin_loop_length_counts_cumulative: HairpinLoopLengthCounts,
    pub bulge_loop_length_counts_cumulative: BulgeLoopLengthCounts,
    pub interior_loop_length_counts_cumulative: InteriorLoopLengthCounts,
    pub interior_loop_length_counts_symm_cumulative: InteriorLoopLengthCountsSymm,
    pub interior_loop_length_counts_asymm_cumulative: InteriorLoopLengthCountsAsymm,
}

Fields§

§hairpin_loop_length_counts: HairpinLoopLengthCounts§bulge_loop_length_counts: BulgeLoopLengthCounts§interior_loop_length_counts: InteriorLoopLengthCounts§interior_loop_length_counts_symm: InteriorLoopLengthCountsSymm§interior_loop_length_counts_asymm: InteriorLoopLengthCountsAsymm§stack_count_mat: StackCountMat§terminal_mismatch_count_mat: TerminalMismatchCount4dMat§left_dangle_count_mat: DangleCount3dMat§right_dangle_count_mat: DangleCount3dMat§helix_end_count_mat: HelixEndCountMat§base_pair_count_mat: BasePairCountMat§interior_loop_length_count_mat_explicit: InteriorLoopLengthCountMatExplicit§bulge_loop_0x1_length_counts: BulgeLoop0x1LengthCounts§interior_loop_1x1_length_count_mat: InteriorLoop1x1LengthCountMat§multi_loop_base_count: FeatureCount§multi_loop_basepairing_count: FeatureCount§multi_loop_accessible_baseunpairing_count: FeatureCount§external_loop_accessible_basepairing_count: FeatureCount§external_loop_accessible_baseunpairing_count: FeatureCount§match_2_match_count: FeatureCount§match_2_insert_count: FeatureCount§insert_extend_count: FeatureCount§init_match_count: FeatureCount§init_insert_count: FeatureCount§insert_counts: InsertCounts§align_count_mat: AlignCountMat§hairpin_loop_length_counts_cumulative: HairpinLoopLengthCounts§bulge_loop_length_counts_cumulative: BulgeLoopLengthCounts§interior_loop_length_counts_cumulative: InteriorLoopLengthCounts§interior_loop_length_counts_symm_cumulative: InteriorLoopLengthCountsSymm§interior_loop_length_counts_asymm_cumulative: InteriorLoopLengthCountsAsymm

Struct consprob_trained::FeatureCountSets

Fields§

Implementations§

impl FeatureCountSets

pub fn load_trained_score_params() -> FeatureCountSets

impl FeatureCountSets

pub fn load_trained_score_params_random_init() -> FeatureCountSets

impl FeatureCountSets

pub fn new(init_val: FeatureCount) -> FeatureCountSets

pub fn get_len(&self) -> usize

pub fn update_regularizers(&self, regularizers: &mut Regularizers)

pub fn update<T: HashIndex>( &mut self, train_data: &[TrainDatum<T>], regularizers: &mut Regularizers)

pub fn mirror(&mut self)

pub fn accumulate(&mut self)

pub fn get_grad<T: HashIndex>( &self, train_data: &[TrainDatum<T>], regularizers: &Regularizers) -> FeatureCounts

pub fn get_cost<T: HashIndex>( &self, train_data: &[TrainDatum<T>], regularizers: &Regularizers) -> FeatureCount

pub fn rand_init(&mut self)

pub fn transfer(&mut self)

Trait Implementations§

impl Clone for FeatureCountSets

fn clone(&self) -> FeatureCountSets

fn clone_from(&mut self, source: &Self)

impl Debug for FeatureCountSets

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Auto Trait Implementations§

impl RefUnwindSafe for FeatureCountSets

impl Send for FeatureCountSets

impl Sync for FeatureCountSets

impl Unpin for FeatureCountSets

impl UnwindSafe for FeatureCountSets

Blanket Implementations§

impl<T> Any for Twhere T: 'static + ?Sized,

fn type_id(&self) -> TypeId

impl<T> Borrow<T> for Twhere T: ?Sized,

fn borrow(&self) -> &T

impl<T> BorrowMut<T> for Twhere T: ?Sized,

fn borrow_mut(&mut self) -> &mut T

impl<T> From<T> for T

fn from(t: T) -> T

impl<T, U> Into<U> for Twhere U: From<T>,

fn into(self) -> U

impl<T> ToOwned for Twhere T: Clone,

type Owned = T

fn to_owned(&self) -> T

fn clone_into(&self, target: &mut T)

impl<T, U> TryFrom<U> for Twhere U: Into<T>,

type Error = Infallible

fn try_from(value: U) -> Result<T, <T as TryFrom<U>>::Error>

impl<T, U> TryInto<U> for Twhere U: TryFrom<T>,

type Error = <U as TryFrom<T>>::Error

fn try_into(self) -> Result<U, <U as TryFrom<T>>::Error>

impl<V, T> VZip<V> for Twhere V: MultiLane<T>,

fn vzip(self) -> V

pub fn update<T: HashIndex>(
&mut self,
train_data: &[TrainDatum<T>],
regularizers: &mut Regularizers
)

pub fn get_grad<T: HashIndex>(
&self,
train_data: &[TrainDatum<T>],
regularizers: &Regularizers
) -> FeatureCounts

pub fn get_cost<T: HashIndex>(
&self,
train_data: &[TrainDatum<T>],
regularizers: &Regularizers
) -> FeatureCount

impl<T> Any for Twhere
T: 'static + ?Sized,

impl<T> Borrow<T> for Twhere
T: ?Sized,

impl<T> BorrowMut<T> for Twhere
T: ?Sized,

impl<T, U> Into<U> for Twhere
U: From<T>,

impl<T> ToOwned for Twhere
T: Clone,

impl<T, U> TryFrom<U> for Twhere
U: Into<T>,

impl<T, U> TryInto<U> for Twhere
U: TryFrom<T>,

impl<V, T> VZip<V> for Twhere
V: MultiLane<T>,