use AlignfoldScores;
impl AlignfoldScores {
pub fn load_trained_scores_randinit() -> AlignfoldScores {
AlignfoldScores {
hairpin_scores_len: [
-0.16026461,
-0.18524459,
-0.18546161,
-0.081555866,
-0.10483597,
-0.18290877,
-0.100186564,
-0.12303605,
-0.086921,
-0.063195564,
-0.15144998,
-0.044670645,
-0.07811314,
-0.11639695,
-0.001002109,
-0.0025151582,
-0.10970445,
0.044767722,
-0.060523193,
0.029328208,
-0.0716545,
0.061189614,
-0.044102598,
-0.03649375,
-0.004399611,
-0.05332595,
0.12944584,
0.10717979,
-0.005910243,
0.030789735,
0.123208106,
],
bulge_scores_len: [
-0.1987034,
-0.19874272,
-0.12800251,
0.105137564,
0.0064870445,
-0.09098844,
-0.10320221,
-0.061248958,
-0.04235435,
-0.002183332,
-0.019106986,
0.0055527403,
-0.061002776,
-0.11768105,
-0.034039486,
0.015746746,
-0.14409746,
0.046554282,
0.08508776,
0.018129056,
-0.042360496,
0.0346406,
0.03815524,
-0.038942117,
0.10701349,
-0.0022790292,
-0.0037548535,
0.033301044,
-0.018391475,
-0.041737583,
],
interior_scores_len: [
-0.38881752,
-0.30291367,
-0.23107138,
-0.21473664,
-0.21094574,
-0.23224415,
-0.13242243,
-0.1877656,
-0.10167064,
-0.07205748,
-0.08768343,
-0.08735031,
-0.04091212,
-0.13616848,
-0.06414757,
-0.12586638,
-0.0759873,
-0.05950124,
-0.060708255,
-0.033038903,
-0.02613205,
0.0010056922,
0.030502023,
-0.008131673,
-0.08141308,
0.017531827,
-0.010290398,
0.015301152,
0.039856397,
],
interior_scores_symmetric: [
-0.256313,
-0.04148638,
-0.045588598,
-0.052644458,
-0.06564261,
0.027363716,
-0.00087265286,
0.035246603,
-0.101229355,
0.061832488,
0.08772831,
0.017771589,
-0.11419665,
0.076349206,
-0.030812306,
],
interior_scores_asymmetric: [
-0.14101301,
-0.021742208,
-0.0011778882,
0.037885852,
-0.008369992,
0.07877666,
0.09730031,
0.08188319,
-0.019257748,
-0.0065125916,
0.037154008,
0.04814885,
0.034352604,
0.052545268,
0.080531344,
0.016152069,
-0.08760962,
0.03727034,
-0.055521812,
0.034403324,
0.004035195,
-0.010659605,
-0.016068367,
-0.024426993,
-0.04899643,
-0.020864502,
0.08902199,
0.072749935,
],
stack_scores: [
[
[
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
],
[
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
],
[
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
],
[
[0.0, 0.0, 0.0, 0.027549004],
[0.0, 0.0, 0.11063433, 0.0],
[0.0, 0.123604245, 0.0, -0.04232577],
[-0.0038870417, 0.0, 0.03366384, 0.0],
],
],
[
[
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
],
[
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
],
[
[0.0, 0.0, 0.0, 0.07290528],
[0.0, 0.0, 0.18660511, 0.0],
[0.0, -0.02053778, 0.0, 0.0404351],
[0.123604245, 0.0, 0.024271239, 0.0],
],
[
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
],
],
[
[
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
],
[
[0.0, 0.0, 0.0, 0.06555876],
[0.0, 0.0, 0.11960391, 0.0],
[0.0, 0.18660511, 0.0, 0.0378911],
[0.11063433, 0.0, 0.07160369, 0.0],
],
[
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
],
[
[0.0, 0.0, 0.0, 0.017482728],
[0.0, 0.0, 0.07160369, 0.0],
[0.0, 0.024271239, 0.0, 0.07987063],
[0.03366384, 0.0, -0.030273793, 0.0],
],
],
[
[
[0.0, 0.0, 0.0, 0.07405748],
[0.0, 0.0, 0.06555876, 0.0],
[0.0, 0.07290528, 0.0, -0.00415811],
[0.027549004, 0.0, 0.017482728, 0.0],
],
[
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
],
[
[0.0, 0.0, 0.0, -0.00415811],
[0.0, 0.0, 0.0378911, 0.0],
[0.0, 0.0404351, 0.0, 0.035700746],
[-0.04232577, 0.0, 0.07987063, 0.0],
],
[
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
],
],
],
terminal_mismatch_scores: [
[
[
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
],
[
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
],
[
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
],
[
[-0.023345396, -0.047565684, 0.032344386, -0.098156415],
[-0.027885182, 0.01716154, -0.05467045, -0.003224064],
[-0.014097232, -0.110123694, -0.07474001, -0.011054073],
[-0.016432445, -0.08621627, 0.007648355, 0.00463411],
],
],
[
[
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
],
[
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
],
[
[0.040533386, 0.054839488, 0.020469604, -0.068450816],
[-0.01612741, -0.029280111, -0.007801386, -0.008422026],
[0.052258, -0.056399584, 0.079199456, -0.060705073],
[-0.039182987, -0.07933793, 0.0116431555, -0.02296726],
],
[
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
],
],
[
[
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
],
[
[-0.005426713, -0.0025926577, 0.1283128, -0.09705886],
[0.030419495, -0.0084805405, -0.116609916, -0.074678816],
[-0.028350787, -0.078592524, -0.02358375, -0.012805989],
[-0.12678994, 0.031894032, -0.0038615933, -0.02722163],
],
[
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
],
[
[-0.032671783, -0.00696848, -0.026720593, -0.037000373],
[0.051049005, -0.07900714, -0.06307453, -0.011105814],
[-0.07092082, -0.0587429, -0.10536349, -0.027125629],
[-0.013270571, 0.07458237, 0.0097360825, -0.026131049],
],
],
[
[
[-0.032782234, -0.017159797, -0.088467464, 0.009264302],
[0.04544425, -0.027284341, -0.080819875, 0.059885293],
[0.015156512, -0.097019, -0.06643955, -0.03304343],
[-0.038107716, -0.11632141, -0.027192947, -0.09236252],
],
[
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
],
[
[-0.06956621, -0.0056005605, 0.044354677, -0.089184515],
[0.046138275, 0.029363817, -0.07922687, 0.0005981386],
[0.011722563, -0.065587275, -0.030909501, -0.039324623],
[-0.08047592, 0.004365726, -0.0066496274, -0.07657213],
],
[
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
],
],
],
dangling_scores_left: [
[
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[-0.028550036, -0.10308483, -0.070424184, -0.06346165],
],
[
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.012912094, -0.07721124, -0.071540155, -0.050249536],
[0.0, 0.0, 0.0, 0.0],
],
[
[0.0, 0.0, 0.0, 0.0],
[0.007324054, -0.070108995, 0.026699746, -0.05076246],
[0.0, 0.0, 0.0, 0.0],
[-0.018610433, -0.028025685, -0.061894916, -0.057448477],
],
[
[-0.0517595, -0.02761818, 0.0625043, 5.3762837e-5],
[0.0, 0.0, 0.0, 0.0],
[-0.06394336, -0.023520935, 0.04647951, -0.0037175135],
[0.0, 0.0, 0.0, 0.0],
],
],
dangling_scores_right: [
[
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[-0.073779054, 0.051238224, -0.027706116, -0.022607243],
],
[
[0.0, 0.0, 0.0, 0.0],
[0.0, 0.0, 0.0, 0.0],
[-0.055902656, -0.052521914, -0.1337225, -0.013380736],
[0.0, 0.0, 0.0, 0.0],
],
[
[0.0, 0.0, 0.0, 0.0],
[0.017627135, -0.053574026, 0.011200197, -0.0535945],
[0.0, 0.0, 0.0, 0.0],
[-0.10533075, 0.032560885, -0.03972903, 0.0848911],
],
[
[-0.05937176, -0.034971926, -0.018419292, -0.025274923],
[0.0, 0.0, 0.0, 0.0],
[-0.0054784045, -0.04142581, 0.013019475, -0.036587603],
[0.0, 0.0, 0.0, 0.0],
],
],
helix_close_scores: [
[0.0, 0.0, 0.0, -0.32923257],
[0.0, 0.0, -0.37238374, 0.0],
[0.0, -0.4511161, 0.0, -0.19902325],
[-0.37383726, 0.0, -0.11369679, 0.0],
],
basepair_scores: [
[0.0, 0.0, 0.0, 0.18632846],
[0.0, 0.0, 0.45956257, 0.0],
[0.0, 0.45956257, 0.0, 0.11898736],
[0.18632846, 0.0, 0.11898736, 0.0],
],
interior_scores_explicit: [
[-0.023309791, -0.15801588, 0.070791274, -0.08851059],
[-0.15801588, -0.07674423, -0.07995145, -0.081332296],
[0.070791274, -0.07995145, -0.07284501, -0.051499218],
[-0.08851059, -0.081332296, -0.051499218, -0.08187399],
],
bulge_scores_0x1: [-0.040541697, -0.025558595, 0.026163504, -0.04584383],
interior_scores_1x1: [
[0.031200385, 0.055414725, -0.033468015, -0.06337662],
[0.055414725, 0.038924314, -0.12518577, 0.05074113],
[-0.033468015, -0.12518577, 0.05768421, -0.093790986],
[-0.06337662, 0.05074113, -0.093790986, -0.021658385],
],
multibranch_score_base: -0.13882922,
multibranch_score_basepair: -0.016621068,
multibranch_score_unpair: -0.13475701,
external_score_basepair: -0.08884542,
external_score_unpair: -0.091088906,
match2match_score: 2.1825306,
match2insert_score: -0.7188392,
insert_extend_score: 0.13025601,
init_match_score: 0.09971973,
init_insert_score: 0.0066791372,
insert_scores: [-0.016173068, -0.10058078, -0.064382404, -0.09538282],
match_scores: [
[0.07690161, -0.12501961, -0.07777325, -0.10453288],
[-0.12501961, 0.17181861, -0.014253967, -0.121423244],
[-0.07777325, -0.014253967, 0.13341045, -0.07457735],
[-0.10453288, -0.121423244, -0.07457735, 0.11744276],
],
hairpin_scores_len_cumulative: [
-0.16026461,
-0.3455092,
-0.5309708,
-0.61252666,
-0.71736264,
-0.9002714,
-1.000458,
-1.123494,
-1.210415,
-1.2736106,
-1.4250605,
-1.4697312,
-1.5478444,
-1.6642413,
-1.6652434,
-1.6677586,
-1.7774631,
-1.7326953,
-1.7932185,
-1.7638903,
-1.8355448,
-1.7743552,
-1.8184577,
-1.8549515,
-1.8593512,
-1.912677,
-1.7832313,
-1.6760515,
-1.6819618,
-1.651172,
-1.5279639,
],
bulge_scores_len_cumulative: [
-0.1987034,
-0.3974461,
-0.5254486,
-0.42031106,
-0.41382402,
-0.5048125,
-0.6080147,
-0.66926366,
-0.711618,
-0.7138013,
-0.7329083,
-0.72735554,
-0.78835833,
-0.90603936,
-0.94007885,
-0.9243321,
-1.0684296,
-1.0218753,
-0.9367875,
-0.91865844,
-0.9610189,
-0.9263783,
-0.88822305,
-0.92716515,
-0.8201517,
-0.82243073,
-0.8261856,
-0.7928845,
-0.811276,
-0.8530136,
],
interior_scores_len_cumulative: [
-0.38881752,
-0.6917312,
-0.92280257,
-1.1375391,
-1.3484849,
-1.580729,
-1.7131515,
-1.900917,
-2.0025878,
-2.0746453,
-2.1623287,
-2.249679,
-2.2905912,
-2.4267597,
-2.4909072,
-2.6167736,
-2.692761,
-2.752262,
-2.8129704,
-2.8460093,
-2.8721414,
-2.8711357,
-2.8406336,
-2.8487654,
-2.9301784,
-2.9126465,
-2.922937,
-2.9076357,
-2.8677793,
],
interior_scores_symmetric_cumulative: [
-0.256313,
-0.29779938,
-0.34338796,
-0.39603242,
-0.46167505,
-0.43431133,
-0.43518397,
-0.39993736,
-0.5011667,
-0.4393342,
-0.3516059,
-0.3338343,
-0.44803095,
-0.37168175,
-0.40249404,
],
interior_scores_asymmetric_cumulative: [
-0.14101301,
-0.16275522,
-0.16393311,
-0.12604725,
-0.13441725,
-0.055640593,
0.04165972,
0.12354291,
0.104285166,
0.097772576,
0.13492659,
0.18307544,
0.21742804,
0.2699733,
0.35050464,
0.36665672,
0.2790471,
0.31631744,
0.26079562,
0.29519895,
0.29923415,
0.28857455,
0.27250618,
0.24807918,
0.19908275,
0.17821825,
0.26724023,
0.33999017,
],
}
}
}