Expand description
Annotation module: GTF parsing and exon boundary mapping.
This module provides the Annotation struct for parsing reference GTF (General Transfer Format)
files and providing efficient lookup for exons and gene coordinates.
It is used to validate BSJ candidates against known transcript boundaries.
Structsยง
- Annotation
- Parsed GTF-derived lookup tables used during BSJ validation and final labeling.
- Gene
Span - One gene span on a chromosome, reconstructed from all exon intervals seen in the GTF.