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pub mod command;
pub mod errors;
pub mod data;
pub mod extract;
pub mod utils {
use chiral_common::JobID;
pub fn ensure_dir() -> std::io::Result<()> {
let home_dir = chiral_common::fs::default_dir();
if !home_dir.exists() {
std::fs::create_dir(home_dir)?;
}
let reports_dir = get_reports_dir();
if !reports_dir.exists() {
std::fs::create_dir(reports_dir)?;
}
Ok(())
}
pub fn get_filepath(filename: &str) -> std::path::PathBuf {
chiral_common::fs::default_dir().join(filename)
}
pub fn get_history_filepath() -> std::path::PathBuf {
chiral_common::fs::default_dir().join("history.txt")
}
pub fn get_reports_dir() -> std::path::PathBuf {
chiral_common::fs::default_dir().join("reports")
}
pub fn get_report_files() -> std::fs::ReadDir {
std::fs::read_dir(get_reports_dir()).unwrap()
}
pub fn get_report_filepath(job_id: &str) -> std::path::PathBuf {
let filename = format!("{job_id}.txt");
get_reports_dir().join(filename)
}
pub fn get_report_filepath_with_timestamp(job_id: &str) -> std::path::PathBuf {
let time_str = chrono::Utc::now().to_string();
let filename = format!("{job_id} {time_str}.txt");
get_reports_dir().join(filename)
}
pub fn get_jobs_filepath() -> std::path::PathBuf {
chiral_common::fs::default_dir().join("jobs.txt")
}
pub fn generate_job_id(op_str: &str) -> JobID {
op_str.to_string() + "_" + chiral_common::utils::generate_id().as_str()
}
}
pub const WELCOME_MESSAGE: &str = "\
=========================================================================
= ______ __ _ __
= / ____/ / /_ (_) _____ ____ _ / /
= / / / __ \\ / / / ___/ / __ `/ / /
= / /___ / / / / / / / / / /_/ / / /
= \\____/ /_/ /_/ /_/ /_/ \\__,_/ /_/
=
= Chiral: a data processing tool for life science written in Rust
= https://www.chiral.one
=
= Chiral command-line-interface provides 3 categories of commands
= - 'ds' for dataset
= - 'cu' for computing units
= - 'job' for computing jobs
=
= Entre 'cu example' for quickstart
= Entre 'ds help' or 'cu help' or 'job help' for command details
=========================================================================
";