List of all items
Structs
- ConformerConfig
- align::AlignResult
- conformer::ConformerEnsemble
- constraints::AngleConstraint
- constraints::BondConstraint
- constraints::ConstraintSet
- coords::Coords3D
- coords::Point3
- etkdg_knowledge::SmartsTorsionRule
- etkdg_knowledge::TorsionPreference
- md::MDConfig
- md::MDFrame
- md::MDTrajectory
- minimize::MinimizeConfig
- pdb::PdbAtom
- sasa::PerElementSasa
- sasa::SasaDescriptor
- spectrophores::SpectrophoresConfig
- stereo3d::StereoAssignment3D
Enums
- ConformerForceField
- conformer::ConformerError
- determine_bonds::DetermineError
- etkdg_knowledge::AtomType
- md::Thermostat
- minimize::ForceField
- spectrophores::SpectrophoresNorm
- xyz::XyzError
Functions
- align::align_coords
- align::apply_alignment
- align::rmsd_no_align
- constraints::build_constraints
- constraints::satisfy_constraints
- descriptors_3d::autocorr_3d
- descriptors_3d::getaway_descriptors
- descriptors_3d::rdf_descriptors
- descriptors_3d::whim_descriptors
- descriptors_3d::whim_getaway_combined
- determine_bonds::determine_bonds
- dg::generate_coords
- dg_fft::generate_coords_dg
- etkdg::generate_coords_etkdg
- etkdg::generate_coords_etkdg_with_noise
- etkdg_knowledge::build_smarts_torsion_map
- etkdg_knowledge::classify_atom_type
- etkdg_knowledge::default_torsion_preference
- etkdg_knowledge::get_torsion_preference
- etkdg_knowledge::score_torsion
- generate_and_minimize_constrained
- generate_and_minimize_dreiding
- generate_and_minimize_uff
- generate_conformer_ensemble
- generate_conformer_ensemble_mmff94
- generate_conformer_ensemble_with_config
- md::run_md
- minimize::minimize
- minimize::minimize_dreiding
- minimize::minimize_dreiding_with_config
- minimize::minimize_mmff94
- minimize::minimize_uff
- minimize::minimize_with_config
- mol_transforms::center_on_origin
- mol_transforms::compute_centroid
- mol_transforms::get_bond_angle
- mol_transforms::get_bond_angle_deg
- mol_transforms::get_bond_length
- mol_transforms::get_dihedral
- mol_transforms::get_dihedral_deg
- mol_transforms::set_dihedral
- mol_transforms::transform_conformer
- pdb::parse_pdb_atoms
- pdb::pdb_to_molecule
- pdb::write_pdb
- pharmacophore_fp_3d::pharmacophore_fp_3d
- pharmacophore_fp_3d::tanimoto_pharmacophore_3d
- sasa::calc_mol_sasa
- sasa::calc_mol_sasa_with_probe
- sasa::sasa
- sasa::sasa_descriptor
- sasa::sasa_descriptor_from_dg
- sasa::sasa_from_dg
- sasa::sasa_per_atom
- sasa::sasa_per_atom_default
- sasa::sasa_per_atom_from_dg
- sasa::sasa_per_element
- sasa::sasa_per_element_from_dg
- sasa::shrake_rupley_sasa
- shape_descriptors::asphericity
- shape_descriptors::eccentricity
- shape_descriptors::npr1
- shape_descriptors::npr2
- shape_descriptors::plane_of_best_fit
- shape_descriptors::pmi
- shape_descriptors::pmi1
- shape_descriptors::pmi2
- shape_descriptors::pmi3
- shape_descriptors::radius_of_gyration
- spectrophores::spectrophores
- spectrophores::tanimoto_spectrophores
- stereo3d::assign_stereo_from_3d
- usr::shape_screen
- usr::usr_descriptors
- usr::usr_from_dg
- usr::usr_similarity
- xyz::parse_xyz
- xyz::write_xyz