Expand description
blobtk is a set of core command line utilities and python bindings for
processing common file formats used by BlobToolKit.
Modulesยง
- bam
- Functions for processing BAM files.
- blobdir
- Functions for processing a BlobDir.
- cli
- The BlobTk Command Line Interface.
- depth
- Summarise windowed coverage depth.
- error
- Error handline.
- fasta
- Functions for processing FASTA files.
- fastq
- Functions for processing FASTQ files.
- filter
- Filter files based on a list of sequence IDs.
- index
- Index files for a GenomeHubs instance.
- io
- Functions for file/terminal IO.
- plot
- Generate a plot.
- python
- Python bindings.
- taxonomy
- Parse and subset a taxonomy.
- utils
- Utility functions.