Crate blobtk

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blobtk is a set of core command line utilities and python bindings for processing common file formats used by BlobToolKit.

Modules§

  • bam
    Functions for processing BAM files.
  • blobdir
    Functions for processing a BlobDir.
  • cli
    The BlobTk Command Line Interface.
  • depth
    Summarise windowed coverage depth.
  • error
    Error handline.
  • fasta
    Functions for processing FASTA files.
  • fastq
    Functions for processing FASTQ files.
  • filter
    Filter files based on a list of sequence IDs.
  • io
    Functions for file/terminal IO.
  • plot
    Generate a plot.
  • python
    Python bindings.
  • taxonomy
    Parse and subset a taxonomy.
  • utils
    Utility functions.