List of all items[−]
Structs
- charsets::ascii::ASCII_LETTERS_HASHSET_STR
- charsets::ascii::ASCII_LETTERS_HASHSET_U8
- charsets::ascii::ASCII_LETTERS_LOWERCASE_HASHSET_STR
- charsets::ascii::ASCII_LETTERS_LOWERCASE_HASHSET_U8
- charsets::ascii::ASCII_LETTERS_UPPERCASE_HASHSET_STR
- charsets::ascii::ASCII_LETTERS_UPPERCASE_HASHSET_U8
- charsets::iupac::BASIC_AMINO_ACID_HASHSET_STR
- charsets::iupac::BASIC_AMINO_ACID_HASHSET_U8
- charsets::iupac::BASIC_DNA_HASHSET_STR
- charsets::iupac::BASIC_DNA_HASHSET_U8
- charsets::iupac::BASIC_LOWERCASE_DNA_HASHSET_STR
- charsets::iupac::BASIC_LOWERCASE_DNA_HASHSET_U8
- charsets::iupac::BASIC_LOWERCASE_RNA_HASHSET_STR
- charsets::iupac::BASIC_LOWERCASE_RNA_HASHSET_U8
- charsets::iupac::BASIC_RNA_HASHSET_STR
- charsets::iupac::BASIC_RNA_HASHSET_U8
- charsets::iupac::IUPAC_AMINO_ACID_HASHSET_STR
- charsets::iupac::IUPAC_AMINO_ACID_HASHSET_U8
- charsets::iupac::IUPAC_HASHSET_STR
- charsets::iupac::IUPAC_HASHSET_U8
- charsets::iupac::IUPAC_NUCLEOTIDE_HASHSET_STR
- charsets::iupac::IUPAC_NUCLEOTIDE_HASHSET_U8
- charsets::quality::PHRED33_HASHSET_STR
- charsets::quality::PHRED33_HASHSET_U8
- charsets::quality::PHRED64_HASHSET_STR
- charsets::quality::PHRED64_HASHSET_U8
- charsets::quality::SANGER_HASHSET_STR
- charsets::quality::SANGER_HASHSET_U8
- charsets::quality::SOLEXA_HASHSET_STR
- charsets::quality::SOLEXA_HASHSET_U8
Traits
- utils::check::CheckPalindrome
- utils::check::CheckRead
- utils::check::CheckU8
- utils::new::New
- utils::replace::AsMutRandomNucleotide
- utils::replace::CopyRandomNucleotide
Functions
- charsets::new_str_hashset
- charsets::new_u8_hashset
- files::fastq::function::remove_illumina_read_number
- files::fastq::function::trim_sra
- files::fastq::hash::find_paired_fastq_reads
- files::fastq::hash::hashset_fastq
- files::http::build_url
- files::http::curl
- files::http::paste_prefix_suffix
- references::ftp::download_gencode_vmxx_2wayconspseudos_gff3_gz
- references::ftp::download_gencode_vmxx_2wayconspseudos_gtf_gz
- references::ftp::download_gencode_vmxx_annotation_gff3_gz
- references::ftp::download_gencode_vmxx_annotation_gtf_gz
- references::ftp::download_gencode_vmxx_basic_annotation_gff3_gz
- references::ftp::download_gencode_vmxx_basic_annotation_gtf_gz
- references::ftp::download_gencode_vmxx_chr_patch_hapl_scaff_annotation_gff3_gz
- references::ftp::download_gencode_vmxx_chr_patch_hapl_scaff_annotation_gtf_gz
- references::ftp::download_gencode_vmxx_chr_patch_hapl_scaff_basic_annotation_gff3_gz
- references::ftp::download_gencode_vmxx_chr_patch_hapl_scaff_basic_annotation_gtf_gz
- references::ftp::download_gencode_vmxx_lncrna_transcripts_fa_gz
- references::ftp::download_gencode_vmxx_long_noncoding_rnas_gff3_gz
- references::ftp::download_gencode_vmxx_long_noncoding_rnas_gtf_gz
- references::ftp::download_gencode_vmxx_metadata_annotation_remark_gz
- references::ftp::download_gencode_vmxx_metadata_entrezgene_gz
- references::ftp::download_gencode_vmxx_metadata_exon_supporting_feature_gz
- references::ftp::download_gencode_vmxx_metadata_gene_source_gz
- references::ftp::download_gencode_vmxx_metadata_mgi_gz
- references::ftp::download_gencode_vmxx_metadata_pdb_gz
- references::ftp::download_gencode_vmxx_metadata_polya_feature_gz
- references::ftp::download_gencode_vmxx_metadata_pubmed_id_gz
- references::ftp::download_gencode_vmxx_metadata_refseq_gz
- references::ftp::download_gencode_vmxx_metadata_selenocysteine_gz
- references::ftp::download_gencode_vmxx_metadata_swissprot_gz
- references::ftp::download_gencode_vmxx_metadata_transcript_source_gz
- references::ftp::download_gencode_vmxx_metadata_transcript_supporting_feature_gz
- references::ftp::download_gencode_vmxx_metadata_trembl_gz
- references::ftp::download_gencode_vmxx_pc_transcripts_fa_gz
- references::ftp::download_gencode_vmxx_pc_translations_fa_gz
- references::ftp::download_gencode_vmxx_polyas_gff3_gz
- references::ftp::download_gencode_vmxx_polyas_gtf_gz
- references::ftp::download_gencode_vmxx_primary_assembly_annotation_gff3_gz
- references::ftp::download_gencode_vmxx_primary_assembly_annotation_gtf_gz
- references::ftp::download_gencode_vmxx_transcripts_fa_gz
- references::ftp::download_gencode_vmxx_trnas_gff3_gz
- references::ftp::download_gencode_vmxx_trnas_gtf_gz
- references::ftp::download_gencode_vxx_2wayconspseudos_gff3_gz
- references::ftp::download_gencode_vxx_2wayconspseudos_gtf_gz
- references::ftp::download_gencode_vxx_annotation_gff3_gz
- references::ftp::download_gencode_vxx_annotation_gtf_gz
- references::ftp::download_gencode_vxx_basic_annotation_gff3_gz
- references::ftp::download_gencode_vxx_basic_annotation_gtf_gz
- references::ftp::download_gencode_vxx_chr_patch_hapl_scaff_annotation_gff3_gz
- references::ftp::download_gencode_vxx_chr_patch_hapl_scaff_annotation_gtf_gz
- references::ftp::download_gencode_vxx_chr_patch_hapl_scaff_basic_annotation_gff3_gz
- references::ftp::download_gencode_vxx_chr_patch_hapl_scaff_basic_annotation_gtf_gz
- references::ftp::download_gencode_vxx_lncrna_transcripts_fa_gz
- references::ftp::download_gencode_vxx_long_noncoding_rnas_gff3_gz
- references::ftp::download_gencode_vxx_long_noncoding_rnas_gtf_gz
- references::ftp::download_gencode_vxx_metadata_annotation_remark_gz
- references::ftp::download_gencode_vxx_metadata_entrezgene_gz
- references::ftp::download_gencode_vxx_metadata_exon_supporting_feature_gz
- references::ftp::download_gencode_vxx_metadata_gene_source_gz
- references::ftp::download_gencode_vxx_metadata_hgnc_gz
- references::ftp::download_gencode_vxx_metadata_pdb_gz
- references::ftp::download_gencode_vxx_metadata_polya_feature_gz
- references::ftp::download_gencode_vxx_metadata_pubmed_id_gz
- references::ftp::download_gencode_vxx_metadata_refseq_gz
- references::ftp::download_gencode_vxx_metadata_selenocysteine_gz
- references::ftp::download_gencode_vxx_metadata_swissprot_gz
- references::ftp::download_gencode_vxx_metadata_transcript_source_gz
- references::ftp::download_gencode_vxx_metadata_transcript_supporting_feature_gz
- references::ftp::download_gencode_vxx_metadata_trembl_gz
- references::ftp::download_gencode_vxx_pc_transcripts_fa_gz
- references::ftp::download_gencode_vxx_pc_translations_fa_gz
- references::ftp::download_gencode_vxx_polyas_gff3_gz
- references::ftp::download_gencode_vxx_polyas_gtf_gz
- references::ftp::download_gencode_vxx_primary_assembly_annotation_gff3_gz
- references::ftp::download_gencode_vxx_primary_assembly_annotation_gtf_gz
- references::ftp::download_gencode_vxx_transcripts_fa_gz
- references::ftp::download_gencode_vxx_trnas_gff3_gz
- references::ftp::download_gencode_vxx_trnas_gtf_gz
- references::ftp::download_grch38_p13_genome_fa_gz
- references::ftp::download_grch38_primary_assembly_genome_fa_gz
- references::ftp::download_grcm39_genome_fa_gz
- references::ftp::download_grcm39_primary_assembly_genome_fa_gz
- references::ftp::download_reference_file
- references::ftp::search_files
- utils::check::is_palindrome
- utils::function::qs_bytes
- utils::hashmap::algebra::value_covariance
- utils::hashmap::algebra::value_dot
- utils::hashmap::algebra::value_norm
- utils::hashmap::algorithms::jaccard
- utils::hashmap::algorithms::pearson
- utils::hashmap::algorithms::value_cosine
Constants
- charsets::ascii::ASCII_LETTERS_LOWERCASE_STR
- charsets::ascii::ASCII_LETTERS_LOWERCASE_U8
- charsets::ascii::ASCII_LETTERS_STR
- charsets::ascii::ASCII_LETTERS_U8
- charsets::ascii::ASCII_LETTERS_UPPERCASE_STR
- charsets::ascii::ASCII_LETTERS_UPPERCASE_U8
- charsets::iupac::BASIC_AMINO_ACID_STR
- charsets::iupac::BASIC_AMINO_ACID_U8
- charsets::iupac::BASIC_DNA_STR
- charsets::iupac::BASIC_DNA_U8
- charsets::iupac::BASIC_LOWERCASE_DNA_STR
- charsets::iupac::BASIC_LOWERCASE_DNA_U8
- charsets::iupac::BASIC_LOWERCASE_RNA_STR
- charsets::iupac::BASIC_LOWERCASE_RNA_U8
- charsets::iupac::BASIC_RNA_STR
- charsets::iupac::BASIC_RNA_U8
- charsets::iupac::B_BASES
- charsets::iupac::B_BASES_LOWERCASE
- charsets::iupac::B_BASES_LOWERCASE_RNA
- charsets::iupac::B_BASES_RNA
- charsets::iupac::D_BASES
- charsets::iupac::D_BASES_LOWERCASE
- charsets::iupac::D_BASES_LOWERCASE_RNA
- charsets::iupac::D_BASES_RNA
- charsets::iupac::GAP_STR
- charsets::iupac::GAP_U8
- charsets::iupac::H_BASES
- charsets::iupac::H_BASES_LOWERCASE
- charsets::iupac::H_BASES_LOWERCASE_RNA
- charsets::iupac::H_BASES_RNA
- charsets::iupac::IUPAC_AMINO_ACID_STR
- charsets::iupac::IUPAC_AMINO_ACID_U8
- charsets::iupac::IUPAC_NUCLEOTIDE_STR
- charsets::iupac::IUPAC_NUCLEOTIDE_U8
- charsets::iupac::IUPAC_STR
- charsets::iupac::IUPAC_U8
- charsets::iupac::K_BASES
- charsets::iupac::K_BASES_LOWERCASE
- charsets::iupac::K_BASES_LOWERCASE_RNA
- charsets::iupac::K_BASES_RNA
- charsets::iupac::M_BASES
- charsets::iupac::M_BASES_LOWERCASE
- charsets::iupac::N_STR
- charsets::iupac::N_U8
- charsets::iupac::R_BASES
- charsets::iupac::R_BASES_LOWERCASE
- charsets::iupac::S_BASES
- charsets::iupac::S_BASES_LOWERCASE
- charsets::iupac::V_BASES
- charsets::iupac::V_BASES_LOWERCASE
- charsets::iupac::W_BASES
- charsets::iupac::W_BASES_LOWERCASE
- charsets::iupac::W_BASES_LOWERCASE_RNA
- charsets::iupac::W_BASES_RNA
- charsets::iupac::Y_BASES
- charsets::iupac::Y_BASES_LOWERCASE
- charsets::iupac::Y_BASES_LOWERCASE_RNA
- charsets::iupac::Y_BASES_RNA
- charsets::quality::PHRED33_STR
- charsets::quality::PHRED33_U8
- charsets::quality::PHRED64_STR
- charsets::quality::PHRED64_U8
- charsets::quality::SANGER_STR
- charsets::quality::SANGER_U8
- charsets::quality::SOLEXA_STR
- charsets::quality::SOLEXA_U8
- references::ftp::FTP_SITE
- references::ftp::HUMAN_RELEASE_DIRECTORY
- references::ftp::MOUSE_RELEASE_DIRECTORY