Struct bio::data_structures::wavelet_matrix::WaveletMatrix

pub struct WaveletMatrix { /* private fields */ }

Implementations

impl WaveletMatrix

pub fn new(text: &[u8]) -> Self

Construct a new instance of the wavelet matrix of given text of length n (DNA alphabet plus sentinel symbol). Complexity: O(n).

pub fn rank(&self, val: u8, p: u64) -> u64

Compute the number of occurrences of symbol val in the original text up to position p (inclusive). Complexity O(1).

Trait Implementations

impl Clone for WaveletMatrix

fn clone(&self) -> WaveletMatrix

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for WaveletMatrix

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for WaveletMatrix

fn default() -> WaveletMatrix

Returns the “default value” for a type.

impl<'de> Deserialize<'de> for WaveletMatrix

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl Hash for WaveletMatrix

fn hash<__H: Hasher>(&self, state: &mut __H)

Feeds this value into the given Hasher.

fn hash_slice<H>(data: &[Self], state: &mut H)where H: Hasher, Self: Sized,

Feeds a slice of this type into the given Hasher.

impl Ord for WaveletMatrix

fn cmp(&self, other: &WaveletMatrix) -> Ordering

This method returns an Ordering between self and other.

fn max(self, other: Self) -> Selfwhere Self: Sized,

Compares and returns the maximum of two values.

fn min(self, other: Self) -> Selfwhere Self: Sized,

Compares and returns the minimum of two values.

fn clamp(self, min: Self, max: Self) -> Selfwhere Self: Sized + PartialOrd<Self>,

Restrict a value to a certain interval.

impl PartialEq<WaveletMatrix> for WaveletMatrix

fn eq(&self, other: &WaveletMatrix) -> bool

This method tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

This method tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl PartialOrd<WaveletMatrix> for WaveletMatrix

fn partial_cmp(&self, other: &WaveletMatrix) -> Option<Ordering>

This method returns an ordering between self and other values if one exists.

fn lt(&self, other: &Rhs) -> bool

This method tests less than (for self and other) and is used by the < operator.

fn le(&self, other: &Rhs) -> bool

This method tests less than or equal to (for self and other) and is used by the <= operator.

fn gt(&self, other: &Rhs) -> bool

This method tests greater than (for self and other) and is used by the > operator.

fn ge(&self, other: &Rhs) -> bool

This method tests greater than or equal to (for self and other) and is used by the >= operator.

impl Serialize for WaveletMatrix

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>where __S: Serializer,

Serialize this value into the given Serde serializer.

impl Eq for WaveletMatrix

impl StructuralEq for WaveletMatrix

impl StructuralPartialEq for WaveletMatrix