Struct bio::alignment::pairwise::TracebackCell

pub struct TracebackCell { /* private fields */ }

Packed representation of one cell of a Smith-Waterman traceback matrix. Stores the I, D and S traceback matrix values in two bytes. Possible traceback moves include : start, insert, delete, match, substitute, prefix clip and suffix clip for x & y. So we need 4 bits each for matrices I, D, S to keep track of these 9 moves.

Implementations

impl TracebackCell

pub fn new() -> TracebackCell

Initialize a blank traceback cell

pub fn set_i_bits(&mut self, value: u16)

pub fn set_d_bits(&mut self, value: u16)

pub fn set_s_bits(&mut self, value: u16)

pub fn get_i_bits(self) -> u16

pub fn get_d_bits(self) -> u16

pub fn get_s_bits(self) -> u16

pub fn set_all(&mut self, value: u16)

Set all matrices to the same value.

Trait Implementations

impl Clone for TracebackCell

fn clone(&self) -> TracebackCell

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for TracebackCell

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for TracebackCell

fn default() -> TracebackCell

Returns the “default value” for a type.

impl<'de> Deserialize<'de> for TracebackCell

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl Hash for TracebackCell

fn hash<__H: Hasher>(&self, state: &mut __H)

Feeds this value into the given Hasher.

fn hash_slice<H>(data: &[Self], state: &mut H)where H: Hasher, Self: Sized,

Feeds a slice of this type into the given Hasher.

impl Ord for TracebackCell

fn cmp(&self, other: &TracebackCell) -> Ordering

This method returns an Ordering between self and other.

fn max(self, other: Self) -> Selfwhere Self: Sized,

Compares and returns the maximum of two values.

fn min(self, other: Self) -> Selfwhere Self: Sized,

Compares and returns the minimum of two values.

fn clamp(self, min: Self, max: Self) -> Selfwhere Self: Sized + PartialOrd<Self>,

Restrict a value to a certain interval.

impl PartialEq<TracebackCell> for TracebackCell

fn eq(&self, other: &TracebackCell) -> bool

This method tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

This method tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl PartialOrd<TracebackCell> for TracebackCell

fn partial_cmp(&self, other: &TracebackCell) -> Option<Ordering>

This method returns an ordering between self and other values if one exists.

fn lt(&self, other: &Rhs) -> bool

This method tests less than (for self and other) and is used by the < operator.

fn le(&self, other: &Rhs) -> bool

This method tests less than or equal to (for self and other) and is used by the <= operator.

fn gt(&self, other: &Rhs) -> bool

This method tests greater than (for self and other) and is used by the > operator.

fn ge(&self, other: &Rhs) -> bool

This method tests greater than or equal to (for self and other) and is used by the >= operator.

impl Serialize for TracebackCell

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>where __S: Serializer,

Serialize this value into the given Serde serializer.

impl Copy for TracebackCell

impl Eq for TracebackCell

impl StructuralEq for TracebackCell

impl StructuralPartialEq for TracebackCell