Struct bio::alignment::pairwise::MatchParams

pub struct MatchParams {
    pub match_score: i32,
    pub mismatch_score: i32,
}

A concrete data structure which implements trait MatchFunc with constant match and mismatch scores

Fields

match_score: i32

mismatch_score: i32

Implementations

impl MatchParams

pub fn new(match_score: i32, mismatch_score: i32) -> Self

Create new MatchParams instance with given match and mismatch scores

Arguments

• match_score - the score for a match (should not be negative)
• mismatch_score - the score for a mismatch (should not be positive)

Trait Implementations

impl Clone for MatchParams

fn clone(&self) -> MatchParams

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for MatchParams

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for MatchParams

fn default() -> MatchParams

Returns the “default value” for a type.

impl<'de> Deserialize<'de> for MatchParams

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl Hash for MatchParams

fn hash<__H: Hasher>(&self, state: &mut __H)

Feeds this value into the given Hasher.

fn hash_slice<H>(data: &[Self], state: &mut H)where H: Hasher, Self: Sized,

Feeds a slice of this type into the given Hasher.

impl MatchFunc for MatchParams

fn score(&self, a: u8, b: u8) -> i32

impl Ord for MatchParams

fn cmp(&self, other: &MatchParams) -> Ordering

This method returns an Ordering between self and other.

fn max(self, other: Self) -> Selfwhere Self: Sized,

Compares and returns the maximum of two values.

fn min(self, other: Self) -> Selfwhere Self: Sized,

Compares and returns the minimum of two values.

fn clamp(self, min: Self, max: Self) -> Selfwhere Self: Sized + PartialOrd<Self>,

Restrict a value to a certain interval.

impl PartialEq<MatchParams> for MatchParams

fn eq(&self, other: &MatchParams) -> bool

This method tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

This method tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl PartialOrd<MatchParams> for MatchParams

fn partial_cmp(&self, other: &MatchParams) -> Option<Ordering>

This method returns an ordering between self and other values if one exists.

fn lt(&self, other: &Rhs) -> bool

This method tests less than (for self and other) and is used by the < operator.

fn le(&self, other: &Rhs) -> bool

This method tests less than or equal to (for self and other) and is used by the <= operator.

fn gt(&self, other: &Rhs) -> bool

This method tests greater than (for self and other) and is used by the > operator.

fn ge(&self, other: &Rhs) -> bool

This method tests greater than or equal to (for self and other) and is used by the >= operator.

impl Serialize for MatchParams

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>where __S: Serializer,

Serialize this value into the given Serde serializer.

impl Copy for MatchParams

impl Eq for MatchParams

impl StructuralEq for MatchParams

impl StructuralPartialEq for MatchParams