Module bio::data_structures::suffix_array
[−]
[src]
Suffix arrays and related algorithms. The implementation is based on the lecture notes "Algorithmen auf Sequenzen", Kopczynski, Marschall, Martin and Rahmann, 2008 - 2015.
Functions
| lcp |
Construct lcp array for given text and suffix array of length n. Complexity: O(n). |
| suffix_array |
Construct suffix array for given text of length n. Complexity: O(n). This is an implementation of the induced sorting as presented by Ge Nong, Sen Zhang und Wai Hong Chan (2009), also known as SAIS. The implementation is based on the following lecture notes: http://ls11-www.cs.tu-dortmund.de/people/rahmann/algoseq.pdf |
Type Definitions
| LCPArray | |
| SuffixArray |