Expand description
Mathematical and statistical tools.
Re-exports
pub use crate::stats::probs::LogProb;
pub use crate::stats::probs::PHREDProb;
pub use crate::stats::probs::Prob;
Modules
Utilities for Bayesian statistics.
Combinations with and without replacement.
An implementation of Hidden Markov Models in Rust.
This module contains the implementation of a classic PairHMM
as described in
Durbin, R., Eddy, S., Krogh, A., & Mitchison, G. (1998). Biological Sequence Analysis.
Current Topics in Genome Analysis 2008. http://doi.org/10.1017/CBO9780511790492.
It also contains a modified variant HomopolyPairHMM
with additional homopolymer states suited
for dealing with homopolymer runs in sequencing as often encountered in Oxford Nanopore
sequencing data.
Handling log-probabilities. Log probabilities are an important tool to deal with probabilities in a numerically stable way, in particular when having probabilities close to zero.