pub struct TracebackCell { /* private fields */ }
Expand description
Packed representation of one cell of a Smith-Waterman traceback matrix. Stores the I, D and S traceback matrix values in two bytes. Possible traceback moves include : start, insert, delete, match, substitute, prefix clip and suffix clip for x & y. So we need 4 bits each for matrices I, D, S to keep track of these 9 moves.
Implementations
sourceimpl TracebackCell
impl TracebackCell
sourcepub fn new() -> TracebackCell
pub fn new() -> TracebackCell
Initialize a blank traceback cell
pub fn set_i_bits(&mut self, value: u16)
pub fn set_d_bits(&mut self, value: u16)
pub fn set_s_bits(&mut self, value: u16)
pub fn get_i_bits(self) -> u16
pub fn get_d_bits(self) -> u16
pub fn get_s_bits(self) -> u16
Trait Implementations
sourceimpl Clone for TracebackCell
impl Clone for TracebackCell
sourcefn clone(&self) -> TracebackCell
fn clone(&self) -> TracebackCell
Returns a copy of the value. Read more
1.0.0 · sourcefn clone_from(&mut self, source: &Self)
fn clone_from(&mut self, source: &Self)
Performs copy-assignment from source
. Read more
sourceimpl Default for TracebackCell
impl Default for TracebackCell
impl Copy for TracebackCell
Auto Trait Implementations
impl RefUnwindSafe for TracebackCell
impl Send for TracebackCell
impl Sync for TracebackCell
impl Unpin for TracebackCell
impl UnwindSafe for TracebackCell
Blanket Implementations
sourceimpl<T> BorrowMut<T> for T where
T: ?Sized,
impl<T> BorrowMut<T> for T where
T: ?Sized,
const: unstable · sourcepub fn borrow_mut(&mut self) -> &mut T
pub fn borrow_mut(&mut self) -> &mut T
Mutably borrows from an owned value. Read more
impl<SS, SP> SupersetOf<SS> for SP where
SS: SubsetOf<SP>,
impl<SS, SP> SupersetOf<SS> for SP where
SS: SubsetOf<SP>,
pub fn to_subset(&self) -> Option<SS>
pub fn to_subset(&self) -> Option<SS>
The inverse inclusion map: attempts to construct self
from the equivalent element of its
superset. Read more
pub fn is_in_subset(&self) -> bool
pub fn is_in_subset(&self) -> bool
Checks if self
is actually part of its subset T
(and can be converted to it).
pub fn to_subset_unchecked(&self) -> SS
pub fn to_subset_unchecked(&self) -> SS
Use with care! Same as self.to_subset
but without any property checks. Always succeeds.
pub fn from_subset(element: &SS) -> SP
pub fn from_subset(element: &SS) -> SP
The inclusion map: converts self
to the equivalent element of its superset.
sourceimpl<T> ToOwned for T where
T: Clone,
impl<T> ToOwned for T where
T: Clone,
type Owned = T
type Owned = T
The resulting type after obtaining ownership.
sourcepub fn to_owned(&self) -> T
pub fn to_owned(&self) -> T
Creates owned data from borrowed data, usually by cloning. Read more
sourcepub fn clone_into(&self, target: &mut T)
pub fn clone_into(&self, target: &mut T)
toowned_clone_into
)Uses borrowed data to replace owned data, usually by cloning. Read more