Enum bio::alignment::AlignmentMode
source · [−]pub enum AlignmentMode {
Local,
Semiglobal,
Global,
Custom,
}
Expand description
The modes of alignment supported by the aligner include standard modes such as Global, Semi-Global and Local alignment. In addition to this, user can also invoke the custom mode. In the custom mode, users can explicitly specify the clipping penalties for prefix and suffix of strings ‘x’ and ‘y’ independently. Under the hood the standard modes are implemented as special cases of the custom mode with the clipping penalties appropriately set.
The default alignment mode is Global.
Variants
Local
Semiglobal
Global
Custom
Trait Implementations
sourceimpl Clone for AlignmentMode
impl Clone for AlignmentMode
sourcepub fn clone(&self) -> AlignmentMode
pub fn clone(&self) -> AlignmentMode
Returns a copy of the value. Read more
1.0.0 · sourcefn clone_from(&mut self, source: &Self)
fn clone_from(&mut self, source: &Self)
Performs copy-assignment from source
. Read more
sourceimpl Debug for AlignmentMode
impl Debug for AlignmentMode
sourceimpl Default for AlignmentMode
impl Default for AlignmentMode
sourcepub fn default() -> AlignmentMode
pub fn default() -> AlignmentMode
Returns the “default value” for a type. Read more
sourceimpl PartialEq<AlignmentMode> for AlignmentMode
impl PartialEq<AlignmentMode> for AlignmentMode
impl Copy for AlignmentMode
impl Eq for AlignmentMode
impl StructuralEq for AlignmentMode
impl StructuralPartialEq for AlignmentMode
Auto Trait Implementations
impl RefUnwindSafe for AlignmentMode
impl Send for AlignmentMode
impl Sync for AlignmentMode
impl Unpin for AlignmentMode
impl UnwindSafe for AlignmentMode
Blanket Implementations
sourceimpl<T> BorrowMut<T> for T where
T: ?Sized,
impl<T> BorrowMut<T> for T where
T: ?Sized,
const: unstable · sourcepub fn borrow_mut(&mut self) -> &mut T
pub fn borrow_mut(&mut self) -> &mut T
Mutably borrows from an owned value. Read more
sourceimpl<Q, K> Equivalent<K> for Q where
Q: Eq + ?Sized,
K: Borrow<Q> + ?Sized,
impl<Q, K> Equivalent<K> for Q where
Q: Eq + ?Sized,
K: Borrow<Q> + ?Sized,
sourcepub fn equivalent(&self, key: &K) -> bool
pub fn equivalent(&self, key: &K) -> bool
Compare self to key
and return true
if they are equal.
impl<SS, SP> SupersetOf<SS> for SP where
SS: SubsetOf<SP>,
impl<SS, SP> SupersetOf<SS> for SP where
SS: SubsetOf<SP>,
pub fn to_subset(&self) -> Option<SS>
pub fn to_subset(&self) -> Option<SS>
The inverse inclusion map: attempts to construct self
from the equivalent element of its
superset. Read more
pub fn is_in_subset(&self) -> bool
pub fn is_in_subset(&self) -> bool
Checks if self
is actually part of its subset T
(and can be converted to it).
pub fn to_subset_unchecked(&self) -> SS
pub fn to_subset_unchecked(&self) -> SS
Use with care! Same as self.to_subset
but without any property checks. Always succeeds.
pub fn from_subset(element: &SS) -> SP
pub fn from_subset(element: &SS) -> SP
The inclusion map: converts self
to the equivalent element of its superset.
sourceimpl<T> ToOwned for T where
T: Clone,
impl<T> ToOwned for T where
T: Clone,
type Owned = T
type Owned = T
The resulting type after obtaining ownership.
sourcepub fn to_owned(&self) -> T
pub fn to_owned(&self) -> T
Creates owned data from borrowed data, usually by cloning. Read more
sourcepub fn clone_into(&self, target: &mut T)
pub fn clone_into(&self, target: &mut T)
toowned_clone_into
)Uses borrowed data to replace owned data, usually by cloning. Read more