Struct bio::io::fastq::Record

pub struct Record { /* fields omitted */ }

A FastQ record.

Methods

impl Record

pub fn new() -> Self

Create a new, empty FastQ record.

pub fn with_attrs(
    id: &str,
    desc: Option<&str>,
    seq: TextSlice,
    qual: &[u8]
) -> Self

Create a new FastQ record from given attributes.

pub fn is_empty(&self) -> bool

Check if record is empty.

pub fn check(&self) -> Result<(), &str>

Check validity of FastQ record.

pub fn id(&self) -> &str

Return the id of the record.

pub fn desc(&self) -> Option<&str>

Return descriptions if present.

pub fn seq(&self) -> TextSlice

Return the sequence of the record.

pub fn qual(&self) -> &[u8]

Return the base qualities of the record.

Trait Implementations

impl Default for Record

fn default() -> Record

Returns the "default value" for a type.

impl Clone for Record

fn clone(&self) -> Record

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Record

fn fmt(&self, f: &mut Formatter) -> Result

Formats the value using the given formatter.

impl Display for Record

fn fmt(&self, f: &mut Formatter) -> Result<(), Error>

Formats the value using the given formatter.

impl SequenceRead for Record

fn name(&self) -> &[u8]

fn base(&self, i: usize) -> u8

fn base_qual(&self, i: usize) -> u8

fn len(&self) -> usize

impl Serialize for Record

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error> where
    __S: Serializer, 

Serialize this value into the given Serde serializer.

impl<'de> Deserialize<'de> for Record

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error> where
    __D: Deserializer<'de>, 

Deserialize this value from the given Serde deserializer.