Struct bio::io::fastq::Reader

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pub struct Reader<R: Read> { /* private fields */ }

Expand description

A FastQ reader.

Implementations

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impl Reader<File>

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pub fn from_file<P: AsRef<Path>>(path: P) -> Result<Self>

Read from a given file.

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impl<R: Read> Reader<R>

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pub fn new(reader: R) -> Self

Read from a given io::Read.

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pub fn records(self) -> Records<R> ⓘ

Return an iterator over the records of this FastQ file.

Trait Implementations

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impl<R: Debug + Read> Debug for Reader<R>

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fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more

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impl<R> FastqRead for Reader<R>where
R: Read,

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fn read(&mut self, record: &mut Record) -> Result<()>

Read into a given record. Returns an error if the record in incomplete or syntax is violated. The content of the record can be checked via the record object.

Auto Trait Implementations

impl<R> RefUnwindSafe for Reader<R>where
R: RefUnwindSafe,

impl<R> Send for Reader<R>where
R: Send,

impl<R> Sync for Reader<R>where
R: Sync,

impl<R> Unpin for Reader<R>where
R: Unpin,

impl<R> UnwindSafe for Reader<R>where
R: UnwindSafe,

Blanket Implementations

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impl<T> Any for Twhere
T: 'static + ?Sized,

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fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more

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impl<T> Borrow<T> for Twhere
T: ?Sized,

const: unstable · source

fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more

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impl<T> BorrowMut<T> for Twhere
T: ?Sized,

const: unstable · source

fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more

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impl<T> From<T> for T

const: unstable · source

fn from(t: T) -> T

Returns the argument unchanged.

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impl<T, U> Into for Twhere
U: From<T>,

const: unstable · source

fn into(self) -> U

Calls U::from(self).

That is, this conversion is whatever the implementation of From<T> for U chooses to do.

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impl<T, U> TryFrom for Twhere
U: Into<T>,

type Error = Infallible

The type returned in the event of a conversion error.

const: unstable · source

fn try_from(value: U) -> Result<T, <T as TryFrom>::Error>

Performs the conversion.

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impl<T, U> TryInto for Twhere
U: TryFrom<T>,

type Error = >::Error

The type returned in the event of a conversion error.

const: unstable · source

fn try_into(self) -> Result<U, >::Error>

Performs the conversion.

Struct bio::io::fastq::Reader

Implementations

impl Reader<File>

pub fn from_file<P: AsRef<Path>>(path: P) -> Result<Self>

impl<R: Read> Reader<R>

pub fn new(reader: R) -> Self

pub fn records(self) -> Records<R> ⓘ

Trait Implementations

impl<R: Debug + Read> Debug for Reader<R>

fn fmt(&self, f: &mut Formatter<'_>) -> Result

impl<R> FastqRead for Reader<R>where
R: Read,

fn read(&mut self, record: &mut Record) -> Result<()>

Auto Trait Implementations

impl<R> RefUnwindSafe for Reader<R>where
R: RefUnwindSafe,

impl<R> Send for Reader<R>where
R: Send,

impl<R> Sync for Reader<R>where
R: Sync,

impl<R> Unpin for Reader<R>where
R: Unpin,

impl<R> UnwindSafe for Reader<R>where
R: UnwindSafe,

Blanket Implementations

impl<T> Any for Twhere
T: 'static + ?Sized,

fn type_id(&self) -> TypeId

impl<T> Borrow<T> for Twhere
T: ?Sized,

fn borrow(&self) -> &T

impl<T> BorrowMut<T> for Twhere
T: ?Sized,

fn borrow_mut(&mut self) -> &mut T

impl<T> From<T> for T

fn from(t: T) -> T

impl<T, U> Into<U> for Twhere
U: From<T>,

fn into(self) -> U

impl<T, U> TryFrom<U> for Twhere
U: Into<T>,

type Error = Infallible

fn try_from(value: U) -> Result<T, <T as TryFrom<U>>::Error>

impl<T, U> TryInto<U> for Twhere
U: TryFrom<T>,

type Error = <U as TryFrom<T>>::Error

fn try_into(self) -> Result<U, <U as TryFrom<T>>::Error>

Struct bio::io::fastq::Reader

Implementations

impl Reader<File>

pub fn from_file<P: AsRef<Path>>(path: P) -> Result<Self>

impl<R: Read> Reader<R>

pub fn new(reader: R) -> Self

pub fn records(self) -> Records<R> ⓘ

Trait Implementations

impl<R: Debug + Read> Debug for Reader<R>

fn fmt(&self, f: &mut Formatter<'_>) -> Result

impl<R> FastqRead for Reader<R>where R: Read,

fn read(&mut self, record: &mut Record) -> Result<()>

Auto Trait Implementations

impl<R> RefUnwindSafe for Reader<R>where R: RefUnwindSafe,

impl<R> Send for Reader<R>where R: Send,

impl<R> Sync for Reader<R>where R: Sync,

impl<R> Unpin for Reader<R>where R: Unpin,

impl<R> UnwindSafe for Reader<R>where R: UnwindSafe,

Blanket Implementations

impl<T> Any for Twhere T: 'static + ?Sized,

fn type_id(&self) -> TypeId

impl<T> Borrow<T> for Twhere T: ?Sized,

fn borrow(&self) -> &T

impl<T> BorrowMut<T> for Twhere T: ?Sized,

fn borrow_mut(&mut self) -> &mut T

impl<T> From<T> for T

fn from(t: T) -> T

impl<T, U> Into<U> for Twhere U: From<T>,

fn into(self) -> U

impl<T, U> TryFrom<U> for Twhere U: Into<T>,

type Error = Infallible

fn try_from(value: U) -> Result<T, <T as TryFrom<U>>::Error>

impl<T, U> TryInto<U> for Twhere U: TryFrom<T>,

type Error = <U as TryFrom<T>>::Error

fn try_into(self) -> Result<U, <U as TryFrom<T>>::Error>

impl<R> FastqRead for Reader<R>where
R: Read,

impl<R> RefUnwindSafe for Reader<R>where
R: RefUnwindSafe,

impl<R> Send for Reader<R>where
R: Send,

impl<R> Sync for Reader<R>where
R: Sync,

impl<R> Unpin for Reader<R>where
R: Unpin,

impl<R> UnwindSafe for Reader<R>where
R: UnwindSafe,

impl<T> Any for Twhere
T: 'static + ?Sized,

impl<T> Borrow<T> for Twhere
T: ?Sized,

impl<T> BorrowMut<T> for Twhere
T: ?Sized,

impl<T, U> Into<U> for Twhere
U: From<T>,

impl<T, U> TryFrom<U> for Twhere
U: Into<T>,

impl<T, U> TryInto<U> for Twhere
U: TryFrom<T>,