Struct bio::alignment::pairwise::TracebackCell

pub struct TracebackCell { /* private fields */ }

Packed representation of one cell of a Smith-Waterman traceback matrix. Stores the I, D and S traceback matrix values in two bytes. Possible traceback moves include : start, insert, delete, match, substitute, prefix clip and suffix clip for x & y. So we need 4 bits each for matrices I, D, S to keep track of these 9 moves.

Implementations

impl TracebackCell

pub fn new() -> TracebackCell

Initialize a blank traceback cell

pub fn set_i_bits(&mut self, value: u16)

pub fn set_d_bits(&mut self, value: u16)

pub fn set_s_bits(&mut self, value: u16)

pub fn get_i_bits(&self) -> u16

pub fn get_d_bits(&self) -> u16

pub fn get_s_bits(&self) -> u16

pub fn set_all(&mut self, value: u16)

Set all matrices to the same value.

Trait Implementations

impl Clone for TracebackCell

fn clone(&self) -> TracebackCell

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Default for TracebackCell

fn default() -> Self

Returns the “default value” for a type.

impl Copy for TracebackCell