Enum bio_types::alignment::AlignmentOperation

pub enum AlignmentOperation {
    Match,
    Subst,
    Del,
    Ins,
    Xclip(usize),
    Yclip(usize),
}

Alignment operations supported are match, substitution, insertion, deletion and clipping. Clipping is a special boundary condition where you are allowed to clip off the beginning/end of the sequence for a fixed clip penalty. The clip penalty could be different for the two sequences x and y, and the clipping operations on both are distinguishable (Xclip and Yclip). The usize value associated with the clipping operations are the lengths clipped. In case of standard modes like Global, Semi-Global and Local alignment, the clip operations are filtered out

Variants

MatchSubstDelInsXclip(usize)Yclip(usize)

Trait Implementations

impl Clone for AlignmentOperation

fn clone(&self) -> AlignmentOperation

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Copy for AlignmentOperation

impl Eq for AlignmentOperation

impl PartialEq<AlignmentOperation> for AlignmentOperation

fn eq(&self, other: &AlignmentOperation) -> bool

This method tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &AlignmentOperation) -> bool

This method tests for !=.

impl Debug for AlignmentOperation

fn fmt(&self, f: &mut Formatter) -> Result

Formats the value using the given formatter.

impl Serialize for AlignmentOperation

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error> where
    __S: Serializer, 

Serialize this value into the given Serde serializer.

impl<'de> Deserialize<'de> for AlignmentOperation

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error> where
    __D: Deserializer<'de>, 

Deserialize this value from the given Serde deserializer.