#[repr(transparent)]pub struct Kmer<C: Codec, const K: usize, S: KmerStorage = usize> {
pub _p: PhantomData<C>,
pub bs: S,
}
Expand description
By default k-mers are backed by usize
, Codec::BITS * K must be <= 64
Fields§
§_p: PhantomData<C>
§bs: S
Implementations§
Trait Implementations§
source§impl<const K: usize> Complement for Kmer<Dna, K>
impl<const K: usize> Complement for Kmer<Dna, K>
Bitwise negation results in the complement of a base. This can be used to efficiently complement a bit-packed sequence of Dna.
source§impl<A: Codec, const K: usize> Hash for Kmer<A, K>
impl<A: Codec, const K: usize> Hash for Kmer<A, K>
use bio_seq::prelude::*;
use std::collections::hash_map::DefaultHasher;
use std::hash::{Hash, Hasher};
let mut hasher1 = DefaultHasher::new();
kmer!("AAA").hash(&mut hasher1);
let hash1 = hasher1.finish();
let mut hasher2 = DefaultHasher::new();
kmer!("AAAA").hash(&mut hasher2);
let hash2 = hasher2.finish();
assert_ne!(hash1, hash2);
source§impl<C: Ord + Codec, const K: usize, S: Ord + KmerStorage> Ord for Kmer<C, K, S>
impl<C: Ord + Codec, const K: usize, S: Ord + KmerStorage> Ord for Kmer<C, K, S>
1.21.0 · source§fn max(self, other: Self) -> Selfwhere
Self: Sized,
fn max(self, other: Self) -> Selfwhere
Self: Sized,
Compares and returns the maximum of two values. Read more
source§impl<A: Codec, const K: usize> PartialEq<Seq<A>> for Kmer<A, K>
impl<A: Codec, const K: usize> PartialEq<Seq<A>> for Kmer<A, K>
source§impl<C: PartialEq + Codec, const K: usize, S: PartialEq + KmerStorage> PartialEq for Kmer<C, K, S>
impl<C: PartialEq + Codec, const K: usize, S: PartialEq + KmerStorage> PartialEq for Kmer<C, K, S>
source§impl<C: PartialOrd + Codec, const K: usize, S: PartialOrd + KmerStorage> PartialOrd for Kmer<C, K, S>
impl<C: PartialOrd + Codec, const K: usize, S: PartialOrd + KmerStorage> PartialOrd for Kmer<C, K, S>
1.0.0 · source§fn le(&self, other: &Rhs) -> bool
fn le(&self, other: &Rhs) -> bool
This method tests less than or equal to (for
self
and other
) and is used by the <=
operator. Read moresource§impl<A: Codec + Complement, const K: usize> ReverseComplement for Kmer<A, K>
impl<A: Codec + Complement, const K: usize> ReverseComplement for Kmer<A, K>
impl<C: Copy + Codec, const K: usize, S: Copy + KmerStorage> Copy for Kmer<C, K, S>
impl<C: Eq + Codec, const K: usize, S: Eq + KmerStorage> Eq for Kmer<C, K, S>
impl<C: Codec, const K: usize, S: KmerStorage> StructuralPartialEq for Kmer<C, K, S>
Auto Trait Implementations§
impl<C, const K: usize, S> Freeze for Kmer<C, K, S>where
S: Freeze,
impl<C, const K: usize, S> RefUnwindSafe for Kmer<C, K, S>where
S: RefUnwindSafe,
C: RefUnwindSafe,
impl<C, const K: usize, S> Send for Kmer<C, K, S>
impl<C, const K: usize, S> Sync for Kmer<C, K, S>
impl<C, const K: usize, S> Unpin for Kmer<C, K, S>
impl<C, const K: usize, S> UnwindSafe for Kmer<C, K, S>where
S: UnwindSafe,
C: UnwindSafe,
Blanket Implementations§
source§impl<T> BorrowMut<T> for Twhere
T: ?Sized,
impl<T> BorrowMut<T> for Twhere
T: ?Sized,
source§fn borrow_mut(&mut self) -> &mut T
fn borrow_mut(&mut self) -> &mut T
Mutably borrows from an owned value. Read more
source§impl<T> FmtForward for T
impl<T> FmtForward for T
source§fn fmt_binary(self) -> FmtBinary<Self>where
Self: Binary,
fn fmt_binary(self) -> FmtBinary<Self>where
Self: Binary,
Causes
self
to use its Binary
implementation when Debug
-formatted.source§fn fmt_display(self) -> FmtDisplay<Self>where
Self: Display,
fn fmt_display(self) -> FmtDisplay<Self>where
Self: Display,
Causes
self
to use its Display
implementation when
Debug
-formatted.source§fn fmt_lower_exp(self) -> FmtLowerExp<Self>where
Self: LowerExp,
fn fmt_lower_exp(self) -> FmtLowerExp<Self>where
Self: LowerExp,
Causes
self
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Debug
-formatted.source§fn fmt_lower_hex(self) -> FmtLowerHex<Self>where
Self: LowerHex,
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Self: LowerHex,
Causes
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Debug
-formatted.source§fn fmt_octal(self) -> FmtOctal<Self>where
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Self: Octal,
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Debug
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Self: UpperExp,
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Self: UpperExp,
Causes
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Debug
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Self: UpperHex,
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-formatted.source§impl<T> Pipe for Twhere
T: ?Sized,
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Pipes by value. This is generally the method you want to use. Read more
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