[−][src]Struct bigbed::BigBed

pub struct BigBed<T: Read + Seek> {
    pub big_endian: bool,
    pub version: u16,
    pub zoom_levels: u16,
    pub chrom_tree_offset: u64,
    pub unzoomed_data_offset: u64,
    pub unzoomed_index_offset: u64,
    pub field_count: u16,
    pub defined_field_count: u16,
    pub as_offset: u64,
    pub total_summary_offset: u64,
    pub uncompress_buf_size: usize,
    pub extension_offset: u64,
    pub level_list: Vec<ZoomLevel>,
    pub extension_size: Option<u16>,
    pub extra_index_count: Option<u16>,
    pub extra_index_list_offset: Option<u64>,
    // some fields omitted
}

Fields

big_endian: boolversion: u16zoom_levels: u16chrom_tree_offset: u64unzoomed_data_offset: u64unzoomed_index_offset: u64field_count: u16defined_field_count: u16as_offset: u64total_summary_offset: u64uncompress_buf_size: usizeextension_offset: u64level_list: Vec<ZoomLevel>extension_size: Option<u16>extra_index_count: Option<u16>extra_index_list_offset: Option<u64>

Methods

impl<T: Read + Seek> BigBed<T>[src]

pub fn from_file(reader: T) -> Result<BigBed<T>, Error>[src]

pub fn attach_unzoomed_cir(&mut self) -> Result<(), Error>[src]

pub fn overlapping_blocks(
    &mut self,
    chrom_id: u32,
    start: u32,
    end: u32
) -> Result<Vec<FileOffsetSize>, Error>[src]

pub fn query(
    &mut self,
    chrom: &str,
    start: u32,
    end: u32,
    max_items: u32
) -> Result<Vec<BedLine>, Error>[src]

pub fn write_bed(
    &mut self,
    chrom: Option<&str>,
    start: Option<u32>,
    end: Option<u32>,
    max_items: Option<u32>,
    output: impl Write
) -> Result<(), Error>[src]

pub fn to_string(
    &mut self,
    chrom: Option<&str>,
    start: Option<u32>,
    end: Option<u32>,
    max_items: Option<u32>
) -> Result<Vec<String>, Error>[src]

pub fn chrom_list(&mut self) -> Result<Vec<Chrom>, Error>[src]

pub fn find_chrom(&mut self, chrom: &str) -> Result<Option<Chrom>, Error>[src]

Trait Implementations

impl<T: Debug + Read + Seek> Debug for BigBed<T>[src]

Auto Trait Implementations

impl<T> Send for BigBed<T> where
    T: Send, 

impl<T> Sync for BigBed<T> where
    T: Sync, 

impl<T> Unpin for BigBed<T> where
    T: Unpin, 

impl<T> UnwindSafe for BigBed<T> where
    T: UnwindSafe, 

impl<T> RefUnwindSafe for BigBed<T> where
    T: RefUnwindSafe, 

Blanket Implementations

impl<T> From<T> for T[src]

impl<T, U> Into<U> for T where
    U: From<T>, [src]

impl<T, U> TryFrom<U> for T where
    U: Into<T>, [src]

type Error = !

The type returned in the event of a conversion error.

impl<T, U> TryInto<U> for T where
    U: TryFrom<T>, [src]

type Error = <U as TryFrom<T>>::Error

The type returned in the event of a conversion error.

impl<T> Borrow<T> for T where
    T: ?Sized, [src]

impl<T> BorrowMut<T> for T where
    T: ?Sized, [src]

impl<T> Any for T where
    T: 'static + ?Sized, [src]