Crate betula_schema 

Rust types and validating parsers for the betula bioinformatics JSON schemas.

types is generated by typify from the JSON Schemas; don’t edit it. typify doesn’t enforce every JSON Schema keyword (e.g. minItems), so parse and parse_str validate against the canonical schema first and only then deserialize. Use them rather than serde_json::from_* directly.

let tree: betula_schema::Tree =
    betula_schema::parse_str(r#"{"name": "A", "length": 0.1, "children": []}"#).unwrap();
assert_eq!(tree.name, "A");

assert!(betula_schema::parse_str::<betula_schema::Tree>(r#"{"name": "A", "length": -1, "children": []}"#).is_err());

Re-exports

pub use crate::types::Alignment;

pub use crate::types::Annotation;

pub use crate::types::BlastResult;

pub use crate::types::DistanceMatrix;

pub use crate::types::DnaAlphabet;

pub use crate::types::DnaSequence;

pub use crate::types::Hit;

pub use crate::types::HitMember;

pub use crate::types::Hsp;

pub use crate::types::Identifier;

pub use crate::types::Location;

pub use crate::types::Metadata;

pub use crate::types::ProteinAlphabet;

pub use crate::types::ProteinSequence;

pub use crate::types::RnaAlphabet;

pub use crate::types::RnaSequence;

pub use crate::types::Sequence;

pub use crate::types::SequenceReference;

pub use crate::types::TaxonomyNode;

pub use crate::types::Tree;

pub use crate::types::UntypedSequence;

pub use crate::types::UnwrappedAlignment;

pub use crate::types::WrappedAlignment;

Modules

types

Enums

Error

Why parsing failed.

Strand

GFF3 strand (column 7). Hand-written because typify can’t derive variant names from +/-/.; generated types refer to it as betula_schema::Strand.

Constants

KINDS

Every betula kind name.

Traits

Kind

A betula schema kind: a generated type paired with the schema it must satisfy.

Functions

parse

Validate already-decoded JSON against the schema for T, then deserialize it.

parse_str

Parse JSON text into T, validating against its schema first.

validate

Check value against the schema for T without deserializing it.