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Module genomic_intervals

Module genomic_intervals 

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§Genomic Intervals Module

This module provides tools for manipulating genomic intervals and coordinates. It includes functionality for:

  • Parsing CIGAR strings to determine alignment spans.
  • Shifting and truncating genomic coordinates (e.g., for Tn5 adjustments).
  • Representing and operating on genomic regions.

Structs§

IntervalMaker
Helper struct for creating genomic intervals from BAM records.
Shift
Represents coordinate shifts to be applied to reads.
Truncate
Represents truncation values for reads.