Struct bader::voxel_map::VoxelMap

pub struct VoxelMap {
    pub voxel_map: Vec<isize>,
    pub weight_map: Vec<Box<[f64]>>,
    pub grid: Grid,
}

A VoxelMap for if the maxima stored are atomic indices.

Fields

voxel_map: Vec<isize>

The vector mapping the voxel to a maxima.

weight_map: Vec<Box<[f64]>>

The vector containing the weights for boundary voxels.

grid: Grid

The Grid used to navigate the VoxelMap.

Implementations

impl VoxelMap

pub fn new( voxel_map: Vec<isize>, weight_map: Vec<Box<[f64]>>, grid: Grid ) -> Self

Create a new VoxelMap

pub fn from_blocking_voxel_map(voxel_map: BlockingVoxelMap) -> Self

Create a new VoxelMap from a BlockingVoxelMap.

pub fn weight_iter(&self) -> Iter<'_, Box<[f64]>>

Produce an Iter over the boundary voxels.

pub fn weight_len(&self) -> usize

Get the length of the weight_map.

pub fn grid_get(&self) -> &Grid

Get a refernce to the grid used by the VoxelMap.

pub fn maxima_to_atom(&self, maxima: usize) -> usize

Returns the atom associated with the point.

pub fn maxima_to_voxel(&self, maxima: isize) -> Voxel<'_>

Retrieval of the state of the voxel, p.

pub fn maxima_to_weight(&self, maxima: isize) -> &[f64]

Return a reference to the weights from the given maxima, Note: maxima here must be < -1.

pub fn maxima_iter(&self) -> Iter<'_, isize>

Return an Iter over the maxima stored in the VoxelMap.

pub fn maxima_len(&self) -> usize

Get the length of the voxel_map.

pub fn maxima_chunks(&self, chunk_size: usize) -> Chunks<'_, isize>

Return a Chunk over the maxima stored in the VoxelMap.

pub fn voxel_get(&self, p: isize) -> Voxel<'_>

Retrieval of the state of the voxel, p.

pub fn maxima_get(&self, p: isize) -> isize

Return the stored maxima at point p.

pub fn volume_map(&self, volume_number: isize) -> Vec<Option<f64>>

Produce a mask for a specific volume number.

pub fn multi_volume_map( &self, volume_numbers: &FxHashSet<isize> ) -> Vec<Option<f64>>

Produce a mask for a collection volume numbers.