List of all items

Structs

• SimpleEvent
• calling::variants::preprocessing::Observations
• cli::PreprocessInput
• testcase::builder::Testcase
• testcase::builder::TestcaseBuilder
• testcase::runner::common::version0::TestcaseVersion0
• testcase::runner::common::version1::TestcaseVersion1
• testcase::runner::common::version2::TestcaseVersion2
• testcase::runner::common::version3::TestcaseVersion3
• testcase::runner::common::version4::TestcaseVersion4
• utils::SimpleCounter
• utils::collect_variants::SkipReasonIter
• utils::collect_variants::VariantInfo
• variants::evidence::observations::pileup::Pileup
• variants::evidence::observations::read_observation::ExactAltLoci
• variants::evidence::observations::read_observation::ReadObservation
• variants::evidence::observations::read_observation::ReadObservationBuilder
• variants::model::Event
• variants::model::VariantTypeIter
• variants::sample::ProtocolStrandednessIter

Enums

• cli::CallKind
• cli::ControlFDRMode
• cli::EstimateKind
• cli::FilterMethod
• cli::PlotKind
• cli::PreprocessKind
• cli::VariantCallMode
• cli::Varlociraptor
• testcase::builder::Mode
• testcase::builder::TestcaseBuilderError
• testcase::runner::common::version0::cli::CallKind
• testcase::runner::common::version0::cli::EstimateKind
• testcase::runner::common::version0::cli::FilterMethod
• testcase::runner::common::version0::cli::VariantCallMode
• testcase::runner::common::version0::cli::Varlociraptor
• utils::collect_variants::SkipReason
• variants::evidence::observations::read_observation::AltLocus
• variants::evidence::observations::read_observation::ReadObservationBuilderError
• variants::evidence::observations::read_observation::ReadPosition
• variants::evidence::observations::read_observation::Strand
• variants::model::HaplotypeIdentifier
• variants::model::VariantType
• variants::sample::ProtocolStrandedness

Traits

• Event
• testcase::runner::common::Testcase

Macros

• default_ref_base_emission
• testcase
• testcase::runner::testcase
• testcase::runner::testcase_should_panic
• testcase_should_panic

Functions

• calling::variants::preprocessing::read_observations
• candidates::methylation::find_candidates
• cli::run
• filtration::fdr::control_fdr
• testcase::runner::common::load_testcase
• utils::collect_variants::collect_variants
• utils::is_bnd
• utils::signif

Type Aliases

• variants::evidence::observations::read_observation::ProcessedReadObservation