Modules§
Enums§
Traits§
- SeqStream
- A stream of ASCII-encoded DNA-sequences. This is not necessarily a standard Rust iterator because we want to support streaming sequences from disk, which is not possible with a regular iterator due to lifetime constraints of the Iterator trait.
Functions§
- evaluate
- optimize_
unitig_ orientation - Given a stream of unitigs, returns a vector of orientations, one for each sequence, aiming to minimize the number of unitigs which do not have an incoming edge in the de Bruijn graph of order k.
- pick_
orientations_ with_ non_ switching_ bfs - pick_
orientations_ with_ switching_ bfs