List of all items
Structs
- agg::Error
- agg::lineage::LineageAggregator
- agg::rank::RankAggregator
- commands::bestof::BestOf
- commands::buildindex::BuildIndex
- commands::fastq2fasta::FastqToFasta
- commands::filter::Filter
- commands::joinkmers::JoinKmers
- commands::pept2lca::PeptToLca
- commands::printindex::PrintIndex
- commands::prot2kmer2lca::ProtToKmerToLca
- commands::prot2kmer::ProtToKmer
- commands::prot2tryp2lca::ProtToTrypToLca
- commands::prot2tryp::ProtToTryp
- commands::seedextend::SeedExtend
- commands::snaptaxon::SnapTaxon
- commands::splitkmers::SplitKmers
- commands::taxa2agg::Error
- commands::taxa2agg::TaxaToAgg
- commands::taxa2freq::TaxaToFreq
- commands::taxa2tree::TaxaToTree
- commands::taxonomy::Taxonomy
- commands::translate::Error
- commands::translate::Translate
- commands::uniq::Uniq
- dna::Frame
- dna::Strand
- dna::translation::Codon
- dna::translation::Error
- dna::translation::TranslationTable
- errors::Error
- io::fasta::ChunkedRecords
- io::fasta::Reader
- io::fasta::Record
- io::fasta::Records
- io::fasta::Writer
- io::fastq::Reader
- io::fastq::Record
- io::fastq::Records
- rank::RankIter
- rmq::RMQ
- rmq::lca::LCACalculator
- rmq::mix::MixCalculator
- rmq::rtl::RTLCalculator
- taxon::Error
- taxon::EulerIterator
- taxon::Lineage
- taxon::Taxon
- taxon::TaxonList
- taxon::TaxonTree
- tree::Tree
- tree::lca::LCACalculator
- tree::mix::MixCalculator
- utils::Zip
Enums
- agg::ErrorKind
- commands::taxa2agg::ErrorKind
- commands::taxa2agg::Method
- commands::taxa2agg::Strategy
- commands::translate::ErrorKind
- commands::translate::Frame
- dna::Nucleotide
- dna::translation::ErrorKind
- errors::ErrorKind
- rank::Rank
- taxon::ErrorKind
Traits
- agg::Aggregator
- agg::MultiThreadSafeAggregator
- agg::ResultExt
- commands::taxa2agg::ResultExt
- commands::translate::ResultExt
- dna::translation::ResultExt
- errors::ResultExt
- taxon::ResultExt
Functions
- agg::count
- agg::filter
- commands::bestof::bestof
- commands::buildindex::buildindex
- commands::fastq2fasta::fastq2fasta
- commands::filter::filter
- commands::joinkmers::joinkmers
- commands::pept2lca::pept2lca
- commands::printindex::printindex
- commands::prot2kmer2lca::prot2kmer2lca
- commands::prot2kmer::prot2kmer
- commands::prot2tryp2lca::prot2tryp2lca
- commands::prot2tryp::prot2tryp
- commands::seedextend::seedextend
- commands::snaptaxon::snaptaxon
- commands::splitkmers::splitkmers
- commands::taxa2agg::taxa2agg
- commands::taxa2freq::taxa2freq
- commands::taxa2tree::taxa2tree
- commands::taxonomy::taxonomy
- commands::translate::translate
- commands::uniq::uniq
- taxon::read_taxa_file
Type Aliases
- agg::Result
- commands::taxa2agg::Result
- commands::translate::Result
- dna::translation::Result
- errors::Result
- taxon::Depth
- taxon::Result
- taxon::TaxonId