Crate umgap

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Contains the implementation of several programs used by the Unipept pipeline.

Modules§

  • agg
    Defines aggregation operations over a taxon tree.
  • commands
    The subcommands of the umgap command.
  • dna
    Module for DNA related code.
  • errors
    Defines the possible errors in Unipept.
  • io
    I/O operations to different formats.
  • rank
    Represents the rank of a Taxon
  • rmq
    Implements aggregation operations using [Range Minimum Query] (https://en.wikipedia.org/wiki/Range_minimum_query) (RMQ)
  • taxon
    Defines operations and data structures over taxons.
  • tree
    Defines aggregation operations using only the tree structure.
  • utils
    Some utils.

Constants§