List of all items
Structs
- cli::Kmers
- cli::MainArgs
- distances::distance_matrix::DistanceMatrix
- distances::distance_matrix::SparseCoreAcc
- distances::distance_matrix::SparseDistanceMatrix
- distances::distance_matrix::SparseJaccard
- hashing::aahash_iterator::AaHashIterator
- hashing::bloom_filter::KmerFilter
- hashing::nthash_iterator::NtHashIterator
- inverted::Inverted
- io::NeedletailIterator
- sketch::Sketch
- sketch::SketchingOpts
- sketch::multisketch::MultiSketch
- sketch::sketch_datafile::SketchArrayReader
- sketch::sketch_datafile::SketchArrayWriter
Enums
- cli::Commands
- cli::InvertedCommands
- cli::InvertedQueryType
- cli::RetainUnmatched
- distances::distance_matrix::DistType
- distances::distance_matrix::DistVec
- hashing::AaLevel
- hashing::HashType
Traits
Functions
- cli::check_and_set_threads
- cli::cli_args
- cli::set_threads_with_writer
- distances::cross_dists_all
- distances::cross_dists_all_stream
- distances::cross_dists_knn
- distances::distance_matrix::calc_col_idx
- distances::distance_matrix::calc_query_indices
- distances::distance_matrix::calc_row_idx
- distances::distance_matrix::ref_query_index
- distances::distance_matrix::square_to_condensed
- distances::self_dists_all
- distances::self_dists_all_stream
- distances::self_dists_knn
- distances::self_dists_knn_precluster
- distances::set_k
- hashing::aahash_iterator::valid_aa
- io::get_input_list
- io::parse_kmers
- io::parse_metadata_info
- io::read_completeness_file
- io::read_input_fastas
- io::read_subset_names
- io::reorder_input_files
- io::set_ostream
- sketch::multisketch::parse_version
- sketch::num_bins
- sketch::sketch_data
- sketch::sketch_datafile::append_batch
- sketch::sketch_files
- utils::get_progress_bar
- utils::save_sketch_data
- utils::strip_sketch_extension