Struct seq_io::fastq::RefRecord

pub struct RefRecord<'a> { /* fields omitted */ }

A FASTQ record that borrows data from a buffer

Methods

impl<'a> RefRecord<'a>

fn to_owned_record(&self) -> OwnedRecord

fn write_unchanged<W: Write>(&self, writer: &mut W) -> Result<()>

Writes a record to the given io::Write instance by just writing the unmodified input, which is faster than RefRecord::write

Trait Implementations

impl<'a> Debug for RefRecord<'a>

fn fmt(&self, __arg_0: &mut Formatter) -> Result

Formats the value using the given formatter.

impl<'a> Clone for RefRecord<'a>

fn clone(&self) -> RefRecord<'a>

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl<'a> Record for RefRecord<'a>

fn head(&self) -> &[u8]

Return the header line of the record as byte slice

fn seq(&self) -> &[u8]

Return the FASTQ sequence as byte slice

fn qual(&self) -> &[u8]

Return the FASTQ qualities as byte slice

fn id_bytes(&self) -> &[u8]

fn id(&self) -> Result<&str, Utf8Error>

Return the ID of the record (everything before an optional space) as string slice

fn desc_bytes(&self) -> Option<&[u8]>

fn desc(&self) -> Option<Result<&str, Utf8Error>>

Return the description of the record as string slice, if present. Otherwise, None is returned.

fn id_desc_bytes(&self) -> (&[u8], Option<&[u8]>)

Return both the ID and the description of the record (if present) This should be faster than calling id() and desc() separately.

fn id_desc(&self) -> Result<(&str, Option<&str>), Utf8Error>

Return both the ID and the description of the record (if present) This should be faster than calling id() and desc() separately.

fn write<W: Write>(&self, writer: &mut W) -> Result<()>

Writes a record to the given io::Write instance