Enum seq_io::fastq::Error

pub enum Error {
    Io(Error),
    UnequalLengths {
        seq: usize,
        qual: usize,
        pos: ErrorPosition,
    },
    InvalidStart {
        found: u8,
        pos: ErrorPosition,
    },
    InvalidSep {
        found: u8,
        pos: ErrorPosition,
    },
    UnexpectedEnd {
        pos: ErrorPosition,
    },
    BufferLimit,
}

Variants

Io(Error)UnequalLengths

sequence and qualitiy lengths are not equal

Fields of UnequalLengths

seq: usize	Length of sequence
qual: usize	Length of qualities
pos: ErrorPosition	Position within file. ErrorPosition::line has the position of the header, not sequence/qualities

InvalidStart

Invalid start byte encountered (expected '@')

Fields of InvalidStart

found: u8	Byte found instead.
pos: ErrorPosition	Position within file. ErrorPosition::id will be None.

InvalidSep

Invalid separator byte encountered (expected '+')

Fields of InvalidSep

found: u8	Byte found instead.
pos: ErrorPosition	Position within file

UnexpectedEnd

Truncated record found

Fields of UnexpectedEnd

pos: ErrorPosition

Position within file.

BufferLimit

Size limit of buffer was reached, which happens if BufStrategy::new_size() returned None (not the case by default).

Trait Implementations

impl Debug for Error

fn fmt(&self, __arg_0: &mut Formatter) -> Result

Formats the value using the given formatter.

impl Display for Error

fn fmt(&self, f: &mut Formatter) -> Result

Formats the value using the given formatter.

impl From<Error> for Error

fn from(e: Error) -> Error

Performs the conversion.

impl StdError for Error

fn description(&self) -> &str

A short description of the error.

fn cause(&self) -> Option<&StdError>

The lower-level cause of this error, if any.