Module rustyms::identification

Only available with feature identification. Read in the annotations from peptide identification sources

Structs

• FastaData
  A single parsed line of a fasta file
• IdentifiedPeptide
  A peptide that is identified by a de novo or database matching program
• IdentifiedPeptideIter
  An iterator returning parsed identified peptides
• MaxQuantData
  The data from any MaxQuant file
• MaxQuantFormat
  The format for any MaxQuant file
• NovorData
  The Novor data
• NovorFormat
  The format for Novor data
• OpairData
  The data for OPair data
• OpairFormat
  The format for OPair data
• PeaksData
  The data from any peaks file
• PeaksFormat
  The format for any Peaks file
• PeaksId
  The scans identifier for a peaks identification

Enums

• MaxQuantVersion
  All possible MaxQuant versions
• MetaData
  The definition of all special metadata for all types of identified peptides that can be read
• NovorVersion
  All available Novor versions
• OpairMatchKind
• OpairVersion
  All possible peaks versions
• PeaksVersion
  All possible peaks versions

Constants

• AB
  Version Ab of PEAKS export
• MSMS
  msms.txt
• MSMS_SCANS
  msmsScans.txt
• NEW_DENOVO
  denovo: # id, scanNum, RT, mz(data), z, pepMass(denovo), err(data-denovo), ppm(1e6*err/(mz*z)), score, peptide, aaScore,
• NEW_PSM
  PSM: #id, spectraId, scanNum, RT, mz, z, pepMass, err, ppm, score, protein, start, length, origin, peptide, noPTMPeptide, aac, allProteins
• NOVO_MSMS_SCANS
  MaxNovo msmsScans.txt
• OLD
  An older version of a PEAKS export
• OLD_DENOVO
  The older supported format for denovo.csv files from Novor
• OLD_PSM
  The older supported format for psms.csv files from Novor
• O_PAIR
  The only supported format for Opair data
• X
  Version X of PEAKS export (made for build 31 january 2019)
• XI
  Version 11 of PEAKS export
• XPLUS
  Version X+ of PEAKS export (made for build 20 november 2019)

Traits

• IdentifiedPeptideSource
  The required methods for any source of identified peptides

Type Aliases

• BoxedIdentifiedPeptideIter
  Convenience type to not have to type out long iterator types