rustybam/lib.rs
1//! # Command line interface for rustybam
2//! [rustybam command line interface, subcommands, and options.](cli::Commands)
3//! # README for rustybam
4#![doc = include_str!("../README.md")]
5/// Annotation of bed files.
6pub mod annotate;
7/// Calculate stats from sam/bam/cram and paf files.
8pub mod bamstats;
9/// Bed file utilities.
10pub mod bed;
11/// Command line interface for rustybam.
12pub mod cli;
13/// Functions for fastx files.
14pub mod fastx;
15/// Mimic of `bedtools getfasta` that works with bgzipped files.
16pub mod getfasta;
17/// Liftover between assemblies using a PAF file.
18pub mod liftover;
19/// Module for automatically reading a writing compressed or uncompressed files.
20pub mod myio;
21/// Make statistics for NucFreq plotting.
22pub mod nucfreq;
23/// PAF file utilities.
24pub mod paf;
25/// Find SUNs within a fasta.
26pub mod suns;
27/// Functions for trimming query overlaps from a PAF file.
28pub mod trim_overlap;
29
30/// bed summary functions
31pub mod bed_stats;
32
33//pub mod test;
34pub mod add_rg;
35pub mod seq_stats;