Module database 

Database functionality for k-mer storage and querying

Provides efficient storage and retrieval of k-mer counts with support for indexed binary format and high-performance query operations.

Re-exports

pub use format::DatabaseFormat;

pub use format::DatabaseHeader;

pub use index::DatabaseIndex;

pub use merge_config::MergeConfig;

pub use merge_config::MergeStats;

pub use merge_config::MergeStrategy;

pub use prefix_cache_merge::ExternalSortMerger;

pub use query::DatabaseQuery;

pub use streaming_merge::DatabaseStreamIterator;

pub use streaming_merge::ExternalMerger;

pub use streaming_merge::StreamingMergeIterator;

pub use streaming_merge::TempFileManager;

Modules

format

Database format definitions and I/O operations

index

Database indexing utilities

memory

Memory usage monitoring utilities

merge_config

Configuration and statistics for database merge operations

merge_error

Comprehensive error handling for merge operations

prefix_cache_merge

True external sort merge implementation for large k-mer database merging

prefix_query

Prefix-based k-mer extraction functionality

prefix_query_optimized

Optimized prefix-based k-mer extraction for sorted databases

query

Database query functionality

stats

Database statistics module for k-mer analysis

streaming_merge

Streaming merge for large database operations

suffix_query

Suffix-based k-mer extraction functionality