Crate rust_spoa

This crate is a Rust wrapper and interface to the SPOA (simd-accelerated partial order alignment) library. This library allows the efficient generation of a consensus sequence from a set of DNA or protein sequences.

If you use this crate, please cite the original authors of SPOA:

Vaser, R., Sović, I., Nagarajan, N. and Šikić, M., 2017. Fast and accurate de novo genome assembly from long uncorrected reads. Genome research, 27(5), pp.737-746.

Functions

poa_consensus

Generates a consensus sequence from a list of sequences.