Module rust_htslib::bam

Module for working with SAM, BAM, and CRAM files.

Re-exports

pub use crate::bam::buffer::RecordBuffer;

pub use crate::bam::errors::Error;

pub use crate::bam::errors::Result;

pub use crate::bam::header::Header;

pub use crate::bam::record::Record;

Modules

buffer
errors
ext	Extensions for BAM records beyond htslib
header
index	Module for working with BAM or CRAM indices.
pileup
record

Structs

ChunkIterator	Iterator over the records of a BAM until the virtual offset is less than end
HeaderView
IndexedReader
Reader	A BAM reader.
Records	Iterator over the records of a BAM.
Writer	A BAM writer.

Enums

CompressionLevel	Compression levels in BAM/CRAM files
Format

Traits

Read	A trait for a BAM reader with a read method.

Functions

set_fai_filename⚠	Set the reference FAI index path in a htslib::htsFile struct for reading CRAM format.
set_threads⚠	Implementation for Read::set_threads and Writer::set_threads.