Function rust_htslib::htslib::bam_mplp_init_overlaps

pub unsafe extern "C" fn bam_mplp_init_overlaps(iter: bam_mplp_t)

bam_mplp_init_overlaps() - if called, mpileup will detect overlapping read pairs and for each base pair set the base quality of the lower-quality base to zero, thus effectively discarding it from calling. If the two bases are identical, the quality of the other base is increased to the sum of their qualities (capped at 200), otherwise it is multiplied by 0.8.