Expand description
rsPOA is an implementation of the POA algorithm, used to align a sequence to a pangenome graph.
More information at rsPOA
Modulesยง
- api
- Application program interface of rsPOA
- args_
parser - Command Line Interface
- bitfield_
path - Interface for path managment
- gaf_
output - .gaf file creation
- gap_
global_ abpoa - adaptive banded POA with gap opening and penalty
- gap_
local_ poa - adaptive banded local POA with gap opening and penalty
- global_
abpoa - adaptive banded POA, with avx2 instructions
- graph
- LnzGraph creation
- local_
poa - adaptive banded local POA, with avx2 instructions
- pathwise_
alignment - DEMO
- score_
matrix - Score matrix for each alignment type
- sequences
- Read preparation for POA
- utils
- Various and miscellaneous