List of all items
Structs
- coverage::coverage_calculator::MetabatDistance
- coverage::coverage_calculator::ReadCollection
- coverage::coverage_table::CoverageTable
- external::coverm_engine::CovermEngine
- kmers::kmer_counting::KmerCorrelation
- kmers::kmer_counting::KmerFrequencyTable
- recover::recover_engine::ClusterResult
- refine::refinery::RefineEngine
Enums
Functions
- cli::build_cli
- cli::recover_full_help
- cli::refine_full_help
- coverage::coverage_calculator::calculate_coverage
- external_command_checker::check_for_bwa
- external_command_checker::check_for_flight
- external_command_checker::check_for_minimap2
- external_command_checker::check_for_ngmlr
- external_command_checker::check_for_samtools
- get_file_reader
- kmers::kmer_counting::count_kmers
- parse_percentage
- recover::recover_engine::run_recover
- refine::refinery::run_refine